Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0339 ATGGGCAATACCGCGAGCAGCGGAGGAAGCAGCCGCAGAAGTCACCGGCGCCATCTCCCTCGTCACCCTCCGCAATCGCAAATTACTGGAAACGAATATGTTTATGCCACTCCCGCATCCCATTCTTCTCGATACCCGAACACTATTACGCACGGCGGAGTCCGCCCTTCACCCATCACGGAAAATTTGGTTGATCGGCAGGTCCCCTGTGGACCAGTTTCCCCACCCCTTGCCCCTTTTGTTGAGCATGACAAAACGGTAACTATTAGGAATAGTGTGAATATCAAGAAGGAGACACTGCGGATTGAGCCCGATCAACACAACCCCGGCAACTTCCTTGTAGCTTTCACCTTCGATGCCACTACACCTGGAAGCATTACAGTTATGTTTTTTGCCAAGGAAACTACAGATGGTAAGCTGGTAGCAGTCAAGGAAAGCATGCTTAAACAAATCTCTATGCCTTTCGAGCAAGGTCTCTGTCAGAAGTTTAGTCAACCTCCTGGAACTGGGATTGACTTCTCAAAGTTAGAGGAGACAGGACTGACAAAAGAAGGTGATACTGAAGTTTATCCTCTTGTGCTGAAGGCTGAGGCTCTGCCATTAAACCCTCATGAAACTGATGGAAACCCATCCTTTCAAATTACTCTGGCAAATTTTGAGAAGGGAGAGAAAGGTGATTACAAGGTCCAAGTAACAAAACAGATTCTCTGGGTTAACGGGAAAAGGTATGAGCTGCAGGAGATATATGGCATTGGGAATGCAGGTGATGGTGATTTTGATGACCTGGAATCTGGAAGAGAATGTGTTATATGCTTATCAGAACCACGAGACATAACAGTCCTCCCTTGCCGACACATGTGCATGTGCAGTGGCTGTGCTAAGCTTTTGAAGTCCCGCAACTGCCCTATATGTCGGCATCCAGTAGAGCGACTATTGGAAATTATGGCGGATAATGGATCCCGTAATCCTTGA 972 0.4743 MGNTASSGGSSRRSHRRHLPRHPPQSQITGNEYVYATPASHSSRYPNTITHGGVRPSPITENLVDRQVPCGPVSPPLAPFVEHDKTVTIRNSVNIKKETLRIEPDQHNPGNFLVAFTFDATTPGSITVMFFAKETTDGKLVAVKESMLKQISMPFEQGLCQKFSQPPGTGIDFSKLEETGLTKEGDTEVYPLVLKAEALPLNPHETDGNPSFQITLANFEKGEKGDYKVQVTKQILWVNGKRYELQEIYGIGNAGDGDFDDLESGRECVICLSEPRDITVLPCRHMCMCSGCAKLLKSRNCPICRHPVERLLEIMADNGSRNP 323
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0339 323 MobiDBLite consensus disorder prediction 1 31 - -
Glsi04g0339 323 Pfam Zinc finger, C3HC4 type (RING finger) 266 310 - -
Glsi04g0339 323 ProSiteProfiles Zinc finger RING-type profile. 268 305 IPR001841 -
Glsi04g0339 323 PANTHER MAHOGUNIN 41 316 IPR045194 GO:0061630
Glsi04g0339 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 315 IPR013083 -
Glsi04g0339 323 SMART ring_2 268 304 IPR001841 -
Glsi04g0339 323 FunFam probable E3 ubiquitin-protein ligase LOG2 252 315 - -
Glsi04g0339 323 SUPERFAMILY RING/U-box 267 312 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi04g0339 Glsi-ChrGlsi04 2163508 2166013 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0339 79 287 C3H Transcription Factor Family AT3G09770 60.092 1.69e-81 249