Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0335 ATGTTCAAAAAGAGTTTTTCTACTGCAAAAGCGATGGGCTGCTGTAGTTGCTTTTGGTTCATCACAAAATACAAACGTCAAAGTTCTAGGGTTGGCAACAACAATAATCTCTCTCAGGAGCCATTGTTGGATGATGACACAGAAGATGATGATGGCTCATATAATGGCGATGTTACTGACAGCACTAGTGGAGATAATAGTGAAGTGCCAACTCGTGCCAAACGATCCGAGGAAATTTTGGAGTTGAGAGCAGAGAATGATATGATTTGTAGGCAGTTTCCTGTTAAAGAAACTCACAAAGTTGTTCGTGCAGAGGATGAAAATGGGAACAAGATGATAAATGAATATGTTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGAAAAGTGGTTCTTTACCAAAGCTGTGTGGATGGAAAACATTATGCAATTAAGGCCTTTCATAAGTCTCATTTAGTGAAGCTTCGAGTTGCACCCTCAGAGACTGCCATGACTGATGTTCTGCGTGAGGTACTCATTATGAAAATGCTGGAACATCCTAATATAGTAAATCTCATTGAGGTGATTGATGACCCAGAATCAGATAACTTCTACATGGTACTTGAATATGTTGAAGGCAAATGGGTGTGTGAGGGTTCAGGTCCTCCTTGTGGCTTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTTTCGGGATTAAGATATCTTCATGATCATAATATAGTACATGGAGATATTAAACCTGATAATCTGTTGGTTACTCGTCATGGTACAGTAAAAATTGGGGATTTCAGCGTCAGCCAGGCTTTAGAGGATGATAATGATGAGCTTCGCCGATCACCTGGTACTCCTGTTTTTACTGCTCCAGAATGTTGTTTAGGTCTTACCTATAATGGTAAAGCTGCAGACACATGGGCAGTAGGAGTTACTCTGTACTGTATGATTTTGGGTCAATACCCATTTCTTGGAGACACACTTCAAGATACTTATGACAAAATTGTCAATAATCCTGTAGTACTACCGGATGATTTGAACCCACAGATAAGGAACTTACTAGAAGGACTACTTTGCAAAGACCCAAAATTTCGGATGACATTGGGTGATGTTGCGGAGCATAGCTGGGTCGTTGGAGACGATGGACCAATTTCTGAGTATTTGTGTTGGTGCAAACGCAAGAGCTTGAATGGGGAAGATTTAAATAGGAGGAATATACTTCCTTGA 1227 0.4042 MFKKSFSTAKAMGCCSCFWFITKYKRQSSRVGNNNNLSQEPLLDDDTEDDDGSYNGDVTDSTSGDNSEVPTRAKRSEEILELRAENDMICRQFPVKETHKVVRAEDENGNKMINEYVREYKIGSGSYGKVVLYQSCVDGKHYAIKAFHKSHLVKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDNFYMVLEYVEGKWVCEGSGPPCGLGEETARKYLRDIVSGLRYLHDHNIVHGDIKPDNLLVTRHGTVKIGDFSVSQALEDDNDELRRSPGTPVFTAPECCLGLTYNGKAADTWAVGVTLYCMILGQYPFLGDTLQDTYDKIVNNPVVLPDDLNPQIRNLLEGLLCKDPKFRMTLGDVAEHSWVVGDDGPISEYLCWCKRKSLNGEDLNRRNILP 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0335 408 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 68 379 - -
Glsi04g0335 408 MobiDBLite consensus disorder prediction 30 74 - -
Glsi04g0335 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Glsi04g0335 408 Gene3D Phosphorylase Kinase; domain 1 110 212 - -
Glsi04g0335 408 SMART serkin_6 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0335 408 Gene3D Transferase(Phosphotransferase) domain 1 217 386 - -
Glsi04g0335 408 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Glsi04g0335 408 SUPERFAMILY Protein kinase-like (PK-like) 108 388 IPR011009 -
Glsi04g0335 408 ProSiteProfiles Protein kinase domain profile. 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0335 408 Pfam Protein kinase domain 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0335 408 CDD STKc_LKB1_CaMKK 122 377 - -
Glsi04g0335 408 FunFam Serine/threonine-protein kinase Ssp1 110 212 - -
Glsi04g0335 408 FunFam Serine/threonine-protein kinase GRIK2 106 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0335 Glsi-ChrGlsi04 2148846 2153393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0335 106 389 CBL-interacting serine-threonine protein kinases AT5G10930 31.633 1.67e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Glsi04g0335 Pkinase 3e-56 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0335 04 2148846 2153393 Glsi04g0335 04 2148846 2153393 ECH