Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0328 ATGGCTTCCTCCAAAAATTCGAAAACAGAAAAGAAAAGCAAAGTTGCAGAAAGCTCCAAAACAGCGAGTAAAGCCAGTAAGCCCAGAAATTTAGAGAAGAAAAATAAGAAGAATAAACCCACCAATCGCAATGTGAAGGAGGATAAAGTACTCATCGTTCCGTCTTCCAGTACTGAGTCACATGACGAAGAAGAAGACGAGAAAGTGCGTGAAGAAGACAAGACTGAGATCACAAATGGGCGAACCAGCGGAACGAAACCCAAGAAAGGCAAACGAATGAAAGATGATGACGAAGACGAAGACGAAGCTGAAAGGAAAGAAGATGCCAAAACTAATGTATTTCCCATGAATCGTATCAGGACAATAATTAGGGGCCAAGATCCTGATTTGCGCGTTTCTCAAGAAGCCATATTTGTCATCAATAAAGCCACGGAGAAGTTCCTTGAACAGTTTACGCAGGATGCTTATGCTTCCTGTGTTCGAGATCGAAAGAAATCTCTTAGTTACAAACACACATCTTCTGTTGTTAGTAAGCAGAGGAGATATGAATTTCTTTCAGATTTTGTTCCTGAGAAACTAAAAGCTGAGGATGCATTAAGAGAGAGAAATTCTGGTGTGAACGGTGGCTGGCTCAAGTTTCAGATTTTCTCTAGAAAGACTGCATTGAGGGAGTTAATACCTCTTTATTCCTCTGCTCGTCTTCAAGTTAAGGCCCAAATGCTAGTTATATAA 732 0.4057 MASSKNSKTEKKSKVAESSKTASKASKPRNLEKKNKKNKPTNRNVKEDKVLIVPSSSTESHDEEEDEKVREEDKTEITNGRTSGTKPKKGKRMKDDDEDEDEAERKEDAKTNVFPMNRIRTIIRGQDPDLRVSQEAIFVINKATEKFLEQFTQDAYASCVRDRKKSLSYKHTSSVVSKQRRYEFLSDFVPEKLKAEDALRERNSGVNGGWLKFQIFSRKTALRELIPLYSSARLQVKAQMLVI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0328 243 MobiDBLite consensus disorder prediction 1 111 - -
Glsi04g0328 243 Gene3D Histone, subunit A 55 191 IPR009072 GO:0046982
Glsi04g0328 243 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 74 204 - -
Glsi04g0328 243 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 114 176 IPR003958 -
Glsi04g0328 243 MobiDBLite consensus disorder prediction 58 79 - -
Glsi04g0328 243 SUPERFAMILY Histone-fold 130 191 IPR009072 GO:0046982
Glsi04g0328 243 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0328 Glsi-ChrGlsi04 2109423 2112374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0328 79 171 CCAAT-HAP5 Transcription Factor Family AT1G07980 41.935 3.15e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Glsi04g0328 CBFD_NFYB_HMF 2.3e-14 CL0012