Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0322 ATGTCTGAAGAAGGCCTTTCTGTTTCTTCCACCATCAAAGCCTTCAACTCAAACTCAAACTCTAGCCCTAACCCTAATTCAAATCCAGTCAAGAAGAAGAGAAATCTACCAGGAACGCCAGATCCAGATGCAGAAGTGATAGCTCTATCGCCCAAGTCCCTGATGGCGACGAATCGTTTCGTGTGCGAAATCTGTAACAAGGGGTTCCAGAGAGACCAGAATTTGCAGCTGCATCGGCGGGGACACAATCTGCCGTGGAAACTCAAGCAGAGAACGAACAAGGAAGTGCGGAAAAAGGTGTACGTGTGCCCTGAAAGGAGCTGCGTTCACCATGACCCCTCTAGAGCCCTGGGAGACCTGACAGGGGTTAAGAAGCACTACAGCCGAAAACACGGTGAGAAGAAGTGGAAGTGCGACAAGTGTTCCAAGAAATATGCTGTTCAGTCGGATTGGAAGGCACATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGCGGCACACTTTTCTCCAGGAAAGACAGCTTCATAACACACAGAGCTTTCTGTGATGCCTTGGCTGAAGAAAGTGGGAGAATAAGTTTAGTTCCAGCAGCAGCTTATTCTAACTTGAGAAGTGATTTGAATTTGATCAACCCTCAAGCACCAAGAATCCCTCAGATATTACCTGGGTTTCATCCAGAATTTGGTGGTTCATCAGAAACGTTGGGGAATTTTTCCGATGCAGGTGTGCATAAGCTGAGGCTGCAACCAGTGCTAGACCAGGTCAATTCCCATCATCTTAATCCGCTTAGCGCTCCAAGCAATTCGACCGCGTTCTCAGGAGCAAATTCTGCATTCAGCTTGCCTGATTTAGTGCAAACGATGAACATGTTTGGGTCATCGTCGTCGTCACAGTCACAGTGGCTAAACCGATACCCAGAAACATCATTTACAAGTGGAAATTTGTGCATGTCTGCAGTACAGACACATGGTCTGAAGCAAGAAGAAGAAGAAAACAAAGGAGAGTTGTCGCATAGCGTCAGCTCTTTGTATCCACAAGGAGGCTTCGTTCACATGTCAGCCACTTCACTCTTGCAGAAAGCAGCCCAAATGGGATCTACAAGGACTAACGATCGCGCACCCTTCAACTCTAACATATTTGGGTTGATGGCTTCAAGCAACGTCAACAGACATGTTGAGGTTGCAAAATTTTTCAAGGACGCAAACCAAACCGAAAACTTGAACGAGTTGGTCAATTCACAAGCAACCACCAATCTTGGAGGTCATCAGCTTTTATTAAATCCTTCAAACTCGAACTCGTTTGTCACAGATCAAATAGAAATGGCAGAAGGGAGGCAAAACGGAGCTGAAATTTTGGGAAAGAATTTTCTTTCGAGTTTAAATGAAGAGCAGCTGGGTTTAACCAGAGATTTTCTGGGTGTTGGTGGCGACTCAATGAACAGACCCTTCTTACAAAAAGAATTAGCCAAGTTTAATGCAATAGGTTCCGGCGTTCAGCCATGGACCTGA 1515 0.4568 MSEEGLSVSSTIKAFNSNSNSSPNPNSNPVKKKRNLPGTPDPDAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPERSCVHHDPSRALGDLTGVKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESGRISLVPAAAYSNLRSDLNLINPQAPRIPQILPGFHPEFGGSSETLGNFSDAGVHKLRLQPVLDQVNSHHLNPLSAPSNSTAFSGANSAFSLPDLVQTMNMFGSSSSSQSQWLNRYPETSFTSGNLCMSAVQTHGLKQEEEENKGELSHSVSSLYPQGGFVHMSATSLLQKAAQMGSTRTNDRAPFNSNIFGLMASSNVNRHVEVAKFFKDANQTENLNELVNSQATTNLGGHQLLLNPSNSNSFVTDQIEMAEGRQNGAEILGKNFLSSLNEEQLGLTRDFLGVGGDSMNRPFLQKELAKFNAIGSGVQPWT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0322 504 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Glsi04g0322 504 Gene3D Classic Zinc Finger 114 192 - -
Glsi04g0322 504 MobiDBLite consensus disorder prediction 1 33 - -
Glsi04g0322 504 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 483 IPR031140 -
Glsi04g0322 504 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Glsi04g0322 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Glsi04g0322 504 Gene3D Classic Zinc Finger 39 110 - -
Glsi04g0322 504 SMART c2h2final6 60 82 IPR013087 -
Glsi04g0322 504 SMART c2h2final6 136 156 IPR013087 -
Glsi04g0322 504 SMART c2h2final6 101 131 IPR013087 -
Glsi04g0322 504 FunFam protein indeterminate-domain 12-like 39 107 - -
Glsi04g0322 504 MobiDBLite consensus disorder prediction 1 44 - -
Glsi04g0322 504 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Glsi04g0322 504 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0322 Glsi-ChrGlsi04 2078038 2079873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0322 30 398 IDZ Gene Family AT3G45260 51.823 2.36e-115 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g0322 zf-C2H2 0.0051 CL0361