Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0316 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAAAGTGCAATCTGTAATGGGAACTGTGAGAAAGGTGCTTGTGTTTGTTGTTTGTCCTCTTCAACTTCTTCATCTTCTAGCTCGTCTTCAGCTCTCGTGTCTTCTTCTTATTTGGAGCTTTGGCATGCTTGTGCTGGCCCCCTCACCTCGCTGCCTAAGAAAGGAAATGTGGTGGTCTATTTCCCACAAGGTCACTTAGAACAAATTTCCTCTTTCTCTCCTTTCTTACCCATGGAGATGCCCACCTATGACCTTCAACCACAGATCTTTTGCAGGGTTGTGAACGTCCAGCTACTTGCCAATAAGAAGAATGATGAGGTTTATACCCAACTTACATTGCTTCCCCAAGCTGAGTTGGGAGGGAAGCATTTGGAGGGCAAAGACGTCGAGGAATTGGGAGGCGATGAGGAAGAAAATGGAGAATCACCTACAAAATCAACCCCTCACATGTTTTGCAAAACGCTTACAGCTTCTGATACCAGCACTCATGGGGGTTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTCGCGAAAGACCTTCATGGAGTGGAGTGGAAATTTCGTCATATTTACAGAGGTCAGCCAAGAAGGCATCTGCTCACTACTGGTTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTACTCTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGGTCTTCCTGCATCCATTGTTGGCAACCATAATTGTAATCCCAATTTTCTTTCCTCAGTGGCTAATGCTGTATCCACCAAAAGCTTGTTTCATGTTTTCTACAGTCCAAGAGGAAGTCATGCGGAGTTTGTTGTGCCCTACCAAAAATATGTTAAAAGCATCAAGAGTCCAATGACCATTGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTGGTGGCGGTATAGTGACTGGAATGGGTGATTTGGATGCTTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTGAGATGGGATGAGGATATTGCTACTAATCATCAAGAACGAGTTTCTCCTTGGGAGATTGATCTTTCTGTTTCTCTCCCTCCCTCGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGCAGCTCTGCATGCTGCCTCACCCAGTCACCTCATCCCTGGTGGAATGGCTGCAGGAGTCAGTGAATTTATGGACTTTGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATTCAGGTTTTGTGCCACTCTTTAATGGATGTGACACAGTAACCAACCCTTCAGATTATGATACAAGTTCTGGTCATCCAAACCTCTTATCAACTGGAGCCAGAAAAGCTACTCCTTCTGAGCTTTTGAGCAGGGTTTGCGCTTCTAATTATGCAGGCTTTCCGGAAGCTAATCAGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCCTTACAGGAATGGTTGATTATAACCTTGGTGCTTGGGGTAAACCCAGTGTCAGTTGCTCAACTTTCAACCAGCTGCATGAGGCATCCAAACCCAAGTTTCACTCTTTGGGACCAGAAGTCCTTCAAACTGCATATTTTCCTTATGGTGACATTCACAAAGCTGGTCAAGGTAGCATGTTGTGCTCTAAATTTACTGATTTCCAGAGAGAGAATGTCCTGTTTAACAAGCCTTCCACTCAGTTGGGGATAATGAGAAATGAAGTTGGAAGATCAGATCTTCCTAATGAGCAGAAGCTGCAGGACGATATTTCTGCTGCTGCTACTTCTTTAGGGCCAAATAACAGGATCTCTAATAATGACAATTTCAAGGGGAAGGTAAATTCCTGTAAGCTATTCGGGTTTCTCTTGTCGGGGGAAACTACGACTCAGAATTTACAGAACTCTGTGAAGAGGAGTTGCACAAAGGTTCACAAGCAAGGGAGCTTAGTTGGACGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGAGTGAGCTAGAGCGACTATTTGGCATGGAGGGCCTTCTGAGAGATCCTGATAAAGGATGGAGGATCCTCTATACTGACAGCGAAAATGACATTATGGTTGTGGGGGATGATCCATGGCATGAGTTCTGCAATGTGGTATCCAAGATCCACATATATACTCAGGAAGAAGTGGAGAAGATGATCGTTGGAATGAACGGTGATGATACCCAGAGCTGTTTGGAACATGGAGCAGTGATAATGGAAGCTTCAAAGTCTTCCTCAGTGGGCCAGCCAGATTCTTCCCCAACAGTTGTTAGGGTCTAG 2424 0.4443 MEIDLNHAVTEVEKSAICNGNCEKGACVCCLSSSTSSSSSSSSALVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQISSFSPFLPMEMPTYDLQPQIFCRVVNVQLLANKKNDEVYTQLTLLPQAELGGKHLEGKDVEELGGDEEENGESPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPASIVGNHNCNPNFLSSVANAVSTKSLFHVFYSPRGSHAEFVVPYQKYVKSIKSPMTIGTRFKMKFEMDESPERRCGGGIVTGMGDLDAYRWPKSKWRCLMVRWDEDIATNHQERVSPWEIDLSVSLPPSSIQSSPRLKKLRTAALHAASPSHLIPGGMAAGVSEFMDFESVRSPKVLQGQENSGFVPLFNGCDTVTNPSDYDTSSGHPNLLSTGARKATPSELLSRVCASNYAGFPEANQFPRVLQGQEICPLRSLTGMVDYNLGAWGKPSVSCSTFNQLHEASKPKFHSLGPEVLQTAYFPYGDIHKAGQGSMLCSKFTDFQRENVLFNKPSTQLGIMRNEVGRSDLPNEQKLQDDISAAATSLGPNNRISNNDNFKGKVNSCKLFGFLLSGETTTQNLQNSVKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLLRDPDKGWRILYTDSENDIMVVGDDPWHEFCNVVSKIHIYTQEEVEKMIVGMNGDDTQSCLEHGAVIMEASKSSSVGQPDSSPTVVRV 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0316 807 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 767 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi04g0316 807 Gene3D - 328 400 - -
Glsi04g0316 807 SUPERFAMILY CAD & PB1 domains 682 758 - -
Glsi04g0316 807 CDD B3_DNA 162 264 IPR003340 GO:0003677
Glsi04g0316 807 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi04g0316 807 FunFam Auxin response factor 162 266 - -
Glsi04g0316 807 SUPERFAMILY DNA-binding pseudobarrel domain 156 271 IPR015300 -
Glsi04g0316 807 Gene3D - 675 768 - -
Glsi04g0316 807 FunFam Auxin response factor 327 400 - -
Glsi04g0316 807 FunFam Auxin response factor 674 768 - -
Glsi04g0316 807 Pfam AUX/IAA family 674 763 IPR033389 -
Glsi04g0316 807 ProSiteProfiles PB1 domain profile. 679 763 IPR000270 GO:0005515
Glsi04g0316 807 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Glsi04g0316 807 Gene3D - 162 266 IPR015300 -
Glsi04g0316 807 SMART B3_2 164 266 IPR003340 GO:0003677
Glsi04g0316 807 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0316 Glsi-ChrGlsi04 2034265 2038529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0316 46 807 B3 DNA Binding Superfamily AT5G60450 60.468 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi04g0316 AUX_IAA 1.1e-06 CL0072