Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0301 ATGGACTGCAGTGAAGCAAACACTCCCACTTCCTCTACCCCTCTTTCTCAATCTCCTTCTTCCTCATCTTCTCCTCCAACCCCACCACCTCCACAAGTTGTTGCTAGCCCTTGTGCTGCCTGCAAGATTCTGAGGCGTAGATGCGCTGAGAAATGCGTGTTGGCACCCTATTTCCCTCCCACTGAGCCTGCCAAGTTCACCATCGCCCACCGAGTCTTCGGCGCCAGCAACATCATTAAGTTCTTGCAGGAACTTCCAGAGTGTCAAAGAGCTGATGCAGTGAGCAGCATGGTTTACGAGGCAAGTGCAAGAATTAGAGACCCAGTGTATGGTTGTGCAGGTGCAATTTGCCAGCTTCAAAAGCAAGTGGGTGAGCTTCAAGCGCAATTAGCCAAGGCACAAGCAGAGCTTGTGAACATGCAACTCCAGCAAGCAAATCTCGTGGCTCTAATTTGCATGGAAATGTCACAAACTGAACCCCAGGAATCACCACAACCATCGTCAGTGGATAATAATTTCATTGCTTCTTCAAGTGCACCCCACAGCAGCGTGTATCAAAGCAATCTCAACTTCTTTGAGGAAAACAGTAGCCTGAACTCACTGTGGGAGCCACTTTGGACATGA 624 0.4936 MDCSEANTPTSSTPLSQSPSSSSSPPTPPPPQVVASPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPECQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVGELQAQLAKAQAELVNMQLQQANLVALICMEMSQTEPQESPQPSSVDNNFIASSSAPHSSVYQSNLNFFEENSSLNSLWEPLWT 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0301 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 168 - -
Glsi04g0301 207 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
Glsi04g0301 207 MobiDBLite consensus disorder prediction 1 20 - -
Glsi04g0301 207 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
Glsi04g0301 207 Coils Coil 116 143 - -
Glsi04g0301 207 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0301 Glsi-ChrGlsi04 1939221 1940463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0301 32 207 AS2 family AT1G07900 65.922 1.03e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi04g0301 LOB 2e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1742 14 17720594 17721562 Glsi04g0301 04 1939221 1940463 CCT
Glsi04g0301 04 1939221 1940463 Glsi04g0301 04 1939221 1940463 ECH