Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0290 ATGAGGACTATGACCGTGCCGCGCGTAACTTTTTTGAGACTCTGTATTTTGATATTTGCCAATTCCAATGGCCGTTGCCGAGGGGAAACTGAAACCAGAGTCTCCAAATTGATATACCAAAACTCACACTCGAAGGAGACGGTTTCAGATCTGAACCCAAGATTCATTTTCTGTTTGTTTCCCGGCAAAATGGAGCAGTTCATTGACAACTTGCCGCCAATGGATCTGATGCGCTCCGAGAAGATGACTTTCGTTCAACTCATCATCCCTGTCGAGTCAGCTCACCGGGCCATCTCTTATATGGGCGAACTCGGCCTTCTCCAATTCCGAGATTTAAATGATGATAAAAGCCCCTTCCAGAGAACGTTTGTTAATCAGGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGGTTTTTCAAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCTCCTCGTCCAGACTTGCGGCCTGATATTGAGTTGGAGGAATTAGAGATACAACTTGCTGAGCATGAACACGAGTTAAATGAAATGAATTCTAATAGCGAGAAACTTCGGCAGTCATATAATGAGCTCCTGGAGTTCAAGATTGTATTGCAAAAGGCATGTGGTTTTCTTGTGTTGAGTCATAGCCATGCTGTTTTAGAGGAGGTAGAACTGGAGGAGAATGTGTACTCAAATGATGATTATGTTGAAACAACATCTTTTCTTGAGCAGGACTTGAGGCGTGGACCATCAAATCAATCTGGTTTACGATTTATCAGTGGGATAATTTGTAAATCCAAGGTTCTTAGGTTTGAAAGGATGCTGTTTCGTGCTACAAGAGGCAATATGCTTTTCAACCAGGCTCCAGCTGATGAACAAATCATGGATCCTGTTTCAACAGAGATGATTGAGAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGAGCAAACAAGAACAAAGATTATGAAAATCTCTGAGGCATTTGGTGCAAATTGTTACCCTGTTCCTGAAGATATACATAAACAGAGGCAAATAACTAGGGAGGTTTCATCCCGTCTTGTTGACTTAGAGGCAACTTTGGATGCTGGTATTAGGCACCGGAATAAGGCCCTTGCTTCCATAGGGGATCATCTAGCAAAATGGATGAATATGGTAAGAAGAGAGAAAGCCATGTATGATACACTGAACATGTTAAATTTCGATGTCACAAAAAAATGTCTTGTTGGAGAGGGATGGTGTCCCATATTTGCAAAAACAAAGATTCAGGAGGCACTGCATCGTGCAACTTTTGATAGTAATTCTCAAGTTGGCATAATTTTTCATCCAATGGATGCAGTGGAATCACCACCTACATATTTTAGAACCAACCATTTTACGAGTGCATATCAGGAAATTGTTGATGCATATGGTGTTGCGAGATACCAAGAAGCAAATCCTGCAGTTTACACTGTAATTACATTCCCATTTCTTTTTGCGGTGATGTTTGGAGACTGGGGTCATGGAATTTGCCTGTTACTGGGAGCATTAGTTCTTTTAGCACGTGAAAGCAAGCTTAGCACCCAGAGACTTGGAAGTTTTATGGAGATGCTATTTGGCGGGCGCTATGTGCTTCTTTTGATGTCACTGTTTTCAATCTATTGTGGGCTAATCTACAACGAATTCTTTTCTGTTCCTTTTCACATTTTTGGTGCGTCTGCATACAAATGCCGAGATGCATCATGCGGGGATGCACATACTGCTGGCTTAATCAAATACCAAGATCCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGATCTGAGTTGGCTTTTCTGAACTCTCTCAAGATGAAGATGTCCATTCTATTGGGTGTGGTGCAGATGAACTTAGGAATTATATTAAGTTATTTCAATGCGCAATTCTTTGGCAACTCTCTGGATATAAGGTACCAGTTTGTGCCACAGATAATTTTCCTTAATAGTCTATTTGGGTATCTTTCCCTTCTCATTGTCATTAAGTGGTGTACTGGCTCTCAGGCAGACCTCTATCATGTAATGATTTACATGTTTTTAAGCCCCACTGACAATCTTGGTGAGAATCAGTTGTTCTGGGGCCAAAGGCCACTTCAGATTGTGTTATTGCTTTTGGCTCTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATATTAAAGAAGCTTCAAACAGAGAGATCACAAGGACGCTCTTATGATAGGCTTAATACATCTGAGGTGGATCTTGAGGTGGAACCAGATTCTGCTAGGGCCAAGCAACATCACGAGGAATTCAATTTCAGTGAGGTCTTTGTTCACCAAATGATCCACTCCATTGAGTTTGTTCTTGGTGCAGTTTCAAATACAGCATCTTATCTTCGACTTTGGGCATTAAGCTTGGCGCACTCAGAACTTTCTACTGTTTTTTATGAGAAAGTCCTCCTCCTTGCTTGGGGGTATGACAATCTAGTCATTCGGTTAGTGGGCCTAGCTGTTTTTGCCTTTGCAACTGCTTTTATACTACTCATGATGGAGACCCTTAGTGCTTTCCTCCATGCTCTGCGTCTTCACTGGGTAGAATTTCAAAACAAATTCTACCATGGTGATGGCTATAAGTTCAGACCTTTTTCCTTTGCCTCCTTAACAGAGGATGATGATTGA 2655 0.4162 MRTMTVPRVTFLRLCILIFANSNGRCRGETETRVSKLIYQNSHSKETVSDLNPRFIFCLFPGKMEQFIDNLPPMDLMRSEKMTFVQLIIPVESAHRAISYMGELGLLQFRDLNDDKSPFQRTFVNQVKRCAEMSRKLRFFKDQINKAGLMSSPRPDLRPDIELEELEIQLAEHEHELNEMNSNSEKLRQSYNELLEFKIVLQKACGFLVLSHSHAVLEEVELEENVYSNDDYVETTSFLEQDLRRGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEQIMDPVSTEMIEKTVFVVFFSGEQTRTKIMKISEAFGANCYPVPEDIHKQRQITREVSSRLVDLEATLDAGIRHRNKALASIGDHLAKWMNMVRREKAMYDTLNMLNFDVTKKCLVGEGWCPIFAKTKIQEALHRATFDSNSQVGIIFHPMDAVESPPTYFRTNHFTSAYQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALVLLARESKLSTQRLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGASAYKCRDASCGDAHTAGLIKYQDPYPFGVDPSWRGSRSELAFLNSLKMKMSILLGVVQMNLGIILSYFNAQFFGNSLDIRYQFVPQIIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLALIAVPWMLFPKPFILKKLQTERSQGRSYDRLNTSEVDLEVEPDSARAKQHHEEFNFSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEDDD 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0290 884 Coils Coil 163 190 - -
Glsi04g0290 884 Pfam V-type ATPase 116kDa subunit family 100 876 IPR002490 GO:0033179|GO:0046961|GO:1902600
Glsi04g0290 884 PANTHER VACUOLAR PROTON ATPASES 76 883 IPR002490 GO:0033179|GO:0046961|GO:1902600
Glsi04g0290 884 PIRSF ATP6V0A1 72 884 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0290 Glsi-ChrGlsi04 1878592 1889043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0290 64 877 Primary Pumps ATPases(2) AT2G28520 80.859 0.0 1362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1751 14 17876449 17890312 Glsi04g0290 04 1878592 1889043 CCT