Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0288 ATGGTGGATCCGAACACCGTCGCAGATTTTCCGGCTGTTCCCACTCGTGGAGGACAGTTCATTCAATATAACATATTCGGAAACCTCTTCGAAGTTTCGGCCAAGTACAGGCCTCCGATTATGCCTATTGGTCGCGGTGCCTATGGAATCGTCTGCTCGCTGTTGAATACGGAGACTAATGAGTTGGTGGCTGTTAAGAAGATAGCGAACGCTTTCGACAGTCTCATGGACGCTAAGCGCACGCTCCGTGAGATTAAGCTTCTTCGGCATTTGGATCACGAAAATGTAATTGGCATAAGAGATGTGATTCCACCACCCTTACGTAGAGAGTTTACCGATGTCTACATAGCCACGGAACTCATGGATACTGATCTTCACCACATCATCCGCTCTAGTCAACGTCTGTCAGAGGAGCACTGCCAATACTTCTTGTATCAGATTCTTCGTGGACTAAAGTATATACATTCTGCAAATATCATCCATAGAGATTTGAAACCTAGCAACCTGTTGGTGAATGCTAATTGTGATTTGAAGATATGTGATTTTGGGCTTGCACGGACGACTTTGGAAAATGATTTCATGACAGAATACGTAGTCACAAGATGGTATAGGGCTCCTGAATTATTGTTGAACTCCTCAGATTATACCTCTGCGATAGACGTGTGGTCTGTAGGCTGCATCTTTATGGAGCTTATGAATAAAAAGCCTCTATTTCCAGGCAGAGATCATGTGCATCAGATGCGCCTATTGACAGAGCTTCTTGGCACTCCAACTGAGGCTGATCTTGGGTTAGTGAAAAGTGAGGATGCGAGAAGATATGTTCGACAACTTCCCCAATATCCTCGTCAACCATTAGCTAGAGTTTTCCCCCATGTTCATCCCTTAGCCATGGATCTCATCGATAGAATGTTAATTATAGATCCCACTCGAAGAATTACAGTGGAAGAAGCATTAGCGCATCCATACCTTGCCAAACTGCATGATGTAGCTGATGAACCAGTCTGCCCAGAGCCATTCTTATTTGATTTTGAGCAAAGACCCTTGGAAGAAGAGCAAATAAAAGATATGATATACGAGGAGGCATTGGCACTCAATCCAGAGTACGCATGA 1110 0.4423 MVDPNTVADFPAVPTRGGQFIQYNIFGNLFEVSAKYRPPIMPIGRGAYGIVCSLLNTETNELVAVKKIANAFDSLMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFTDVYIATELMDTDLHHIIRSSQRLSEEHCQYFLYQILRGLKYIHSANIIHRDLKPSNLLVNANCDLKICDFGLARTTLENDFMTEYVVTRWYRAPELLLNSSDYTSAIDVWSVGCIFMELMNKKPLFPGRDHVHQMRLLTELLGTPTEADLGLVKSEDARRYVRQLPQYPRQPLARVFPHVHPLAMDLIDRMLIIDPTRRITVEEALAHPYLAKLHDVADEPVCPEPFLFDFEQRPLEEEQIKDMIYEEALALNPEYA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0288 369 FunFam Mitogen-activated protein kinase 22 130 - -
Glsi04g0288 369 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Glsi04g0288 369 SUPERFAMILY Protein kinase-like (PK-like) 42 331 IPR011009 -
Glsi04g0288 369 Pfam Protein kinase domain 42 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0288 369 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Glsi04g0288 369 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Glsi04g0288 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Glsi04g0288 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 35 324 - -
Glsi04g0288 369 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Glsi04g0288 369 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0288 369 FunFam Mitogen-activated protein kinase 121 349 - -
Glsi04g0288 369 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0288 Glsi-ChrGlsi04 1869262 1872385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0288 8 369 MAP Kinase Gene Family AT3G45640 81.492 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Glsi04g0288 Pkinase 2.4e-71 CL0016