Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0284 ATGGAATCCGATAGTCGGCGATCTTTCGCTTCCGACGCTCAACTCATCGCCGAGCAAATGACGAATGCAACTTCCCTTGCTTCGGCTTCGGGTGCCATGTTAGATCTTAATCTCAATGCGGATTCGACCGATTCGACTCAGAACGATAACTCGCACGTGTTCTTCGACAAATTTCCTGAACCTTCTGGGAATCAAATGGCGGAATCGGGGACCTCTAATTCCTCTATCGTCAATGCCGACGGCTCCGGCACTGGAGTAGGCGACGATGAATCCTGCTCCACACGCGCCGGCGACGTATTCACCTTTAATTTCGATATCCTCAAAGTGGAAGGTGGGAACGACGTCGGAACCAAGGAGCTATTTCCGGTCACTGGGGTAAAACGAGTGGACAGCGAGTCTGGGAATTGGCAGGGGCAATCTTCATCTTCCTTTCCGTCAAAGAAGAGCTGGATGGATCTCTCATTCGATCATCAAGGTGGAAGCGGAGAAATGAAGGTGGTTCAGGTTCAGCAACAACCTCAGCCGCAGGTGAAGAAGAGCAGGAGGGGTCCAAGGTCTCGGAGCTCCCAGTACAGAGGAGTCACCTTCTACAGGAGGACTGGAAGATGGGAATCACATATCTGGGATTGCGGGAAACAAGTCTATTTAGGTGGATTTGACACTGCACATGCCGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGAAGCTGACATCAATTTCAACCTCAGTGATTATGAGGAGGATCTTAAACAGATGAAGAATCTTACTAAGGAGGAGTTCGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCTAGGGGGAGTTCAAAATACCGAGGAGTAACACTGCACAAATGTGGCCGTTGGGAAGCTCGGATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTGTTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGATAAGGCAGCTATCAAATGCAACGGAAGGGAAGCAGTAACTAACTTCGAGCCAAGTACATATGAAGGGGAGATGAACTCTGAAGCAATTAATAAAGGTGGTAGTCACAATCTTGACCTCAACTTGGGGATAGCAACCCCAGGCAATGGTCCCAATGAAAACACAGGTCAAATTCAGTTCCAGTCTGTCCCTTACAACATGCATGCCGGAAGAAGTTCAAGGATGGAGACCACAACTGATTCATTAATTGGCGATCCATCTATAAAATGGCTGGTAGCAACTGAAGATCGTCCTTCTGTATGGAATGGCATATATCCTAGTTTCTTTCCCATTGAGGAAAGAGCAGAGAGAACTAGCACAGATCCCTCACAAGGACTCCCCAATCGGGCGTGGCAAACGCATGGCCAGGTCACTGCTACCCCATTACCTCAATTCTCTACTGCAGCATCATCAGGATTCCCAATTTCATCTACATTTCCATCGACTGCTATTTTTCCTGCGAAACCCATGAACTCGCCTCCCCAGAATCTGTGTTTTACCTCATCCAGCACAACTGGCAGCAATACAACTCAATTTTATTACCAGATGAAGTACCCGCAGGCACCACCCTAG 1578 0.4816 MESDSRRSFASDAQLIAEQMTNATSLASASGAMLDLNLNADSTDSTQNDNSHVFFDKFPEPSGNQMAESGTSNSSIVNADGSGTGVGDDESCSTRAGDVFTFNFDILKVEGGNDVGTKELFPVTGVKRVDSESGNWQGQSSSSFPSKKSWMDLSFDHQGGSGEMKVVQVQQQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYEEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMNSEAINKGGSHNLDLNLGIATPGNGPNENTGQIQFQSVPYNMHAGRSSRMETTTDSLIGDPSIKWLVATEDRPSVWNGIYPSFFPIEERAERTSTDPSQGLPNRAWQTHGQVTATPLPQFSTAASSGFPISSTFPSTAIFPAKPMNSPPQNLCFTSSSTTGSNTTQFYYQMKYPQAPP 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0284 525 SMART rav1_2 282 345 IPR001471 GO:0003700|GO:0006355
Glsi04g0284 525 SMART rav1_2 190 252 IPR001471 GO:0003700|GO:0006355
Glsi04g0284 525 FunFam AP2-like ethylene-responsive transcription factor 189 248 - -
Glsi04g0284 525 MobiDBLite consensus disorder prediction 39 73 - -
Glsi04g0284 525 SUPERFAMILY DNA-binding domain 281 340 IPR016177 GO:0003677
Glsi04g0284 525 Gene3D AP2/ERF domain 189 247 IPR036955 GO:0003700|GO:0006355
Glsi04g0284 525 Gene3D AP2/ERF domain 281 340 IPR036955 GO:0003700|GO:0006355
Glsi04g0284 525 FunFam AP2-like ethylene-responsive transcription factor 281 341 - -
Glsi04g0284 525 Pfam AP2 domain 190 238 IPR001471 GO:0003700|GO:0006355
Glsi04g0284 525 Pfam AP2 domain 281 331 IPR001471 GO:0003700|GO:0006355
Glsi04g0284 525 ProSiteProfiles AP2/ERF domain profile. 190 246 IPR001471 GO:0003700|GO:0006355
Glsi04g0284 525 ProSiteProfiles AP2/ERF domain profile. 282 339 IPR001471 GO:0003700|GO:0006355
Glsi04g0284 525 MobiDBLite consensus disorder prediction 169 191 - -
Glsi04g0284 525 PRINTS Ethylene responsive element binding protein signature 283 294 IPR001471 GO:0003700|GO:0006355
Glsi04g0284 525 PRINTS Ethylene responsive element binding protein signature 321 341 IPR001471 GO:0003700|GO:0006355
Glsi04g0284 525 MobiDBLite consensus disorder prediction 39 53 - -
Glsi04g0284 525 CDD AP2 190 248 IPR001471 GO:0003700|GO:0006355
Glsi04g0284 525 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 148 434 - -
Glsi04g0284 525 CDD AP2 281 341 IPR001471 GO:0003700|GO:0006355
Glsi04g0284 525 SUPERFAMILY DNA-binding domain 189 247 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0284 Glsi-ChrGlsi04 1844612 1848623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0284 33 525 AP2-EREBP Transcription Factor Family AT5G60120 45.279 1.56e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi04g0284 AP2 3.2e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1761 14 17991258 17994924 Glsi04g0284 04 1844612 1848623 CCT