Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0279 ATGCATTGCTTTCGCTGCACTGGCGAATCAAGCAAAAAATCCGCCACAAACGGCAATAGCAAAAACTGTAGCCAGAGCAAGAAGACAAACAATCTCACCGCTGCAGAAAAGGTCAAAGTTGATTTGAATGAGAACGACGAAGCTATTTCTAAGGACGATCAACTTTCTCTGTCAGATCTAAAAGAGGAGGTTTTGAAGGATGGAAAAGTTAATGATAACGGAGCACAAACATTTACATTTGATGAACTTGCATCTGCAACGGATAATTTTAGGTCAGATTGCTTTTTGGGTGAAGGAGGTTTTGGCAAGGTTTACAAAGGGTACTTGGAGAGAGTAAACCAGATTGTAGCTATAAAGCAACTGGACCCCAATGGACAACAAGGGATTCGGGAATTTGTTGTTGAAGTGTTGACACTGAGTTTGGCAGACCACCCTAATCTTGTCAAACTGATTGGGTTTTGTGCCCAAGGAAAGCAGAGATTGTTGGTTTATGAGTACATGGGACTGGGATCTTTGGAGAACCATTTACATGATCTTGCACCTGGTAGAAAAGGGCTAGATTGGAATACAAGAATGAAAATAGCAGCTGGAGCGGCAAGGGGTTTGGAATATTTGCATGATAAAATGAAGCCCCCTGTGATATACCGTGACCTGAAATGCTCTAACATTTTGTTAGGGGAAGGATATCATCCCAAGTTGTCTGATTTTGGGTTGGCTAAAGTTGGCCCAAGCGGGGATGACACCCACGTTTCAACAAGGGTTATGGGCACATATGGCTATTGTGCTCCAGATTATGCAATGACGGGTCAGTTAACATTCAAGTCAGATATTTATAGCTTTGGGGTTGCTCTTTTGGAGCTCATCACAGGCAGAAAAGCCATTGATAGTACCAAATCTACCAGAGAACAAAATCTGGTCTCATGGGCGAGGCCCTTGTTCAAAGACCGAAAAAGATTCTCGCAAATGGTTGATCCATTGCTTCAGGATCAATATCCAGTGAGAGGTTCGTATCAAGCTATAGCTATTGCTGCTATGTGTGTTCAAGAGAAGCCTAGTATGAGGCCTGTTATAGGTGATGTGGTTACAGCTTTAGATTACCTTGCTTCCCAGAATTATGATCCCCAAATGCATGCTTTACGAAACTCCAGAAGAAGCCCGACTTCTCCTAGACTCAGAAAGCTGGATGACGATCATAGACTCATTGTTGGTAATAATCAGCCCGAGTCAGACAGATCTGGAGACTAA 1245 0.4289 MHCFRCTGESSKKSATNGNSKNCSQSKKTNNLTAAEKVKVDLNENDEAISKDDQLSLSDLKEEVLKDGKVNDNGAQTFTFDELASATDNFRSDCFLGEGGFGKVYKGYLERVNQIVAIKQLDPNGQQGIREFVVEVLTLSLADHPNLVKLIGFCAQGKQRLLVYEYMGLGSLENHLHDLAPGRKGLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDDTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVALLELITGRKAIDSTKSTREQNLVSWARPLFKDRKRFSQMVDPLLQDQYPVRGSYQAIAIAAMCVQEKPSMRPVIGDVVTALDYLASQNYDPQMHALRNSRRSPTSPRLRKLDDDHRLIVGNNQPESDRSGD 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0279 414 FunFam probable serine/threonine-protein kinase RLCKVII 62 166 - -
Glsi04g0279 414 MobiDBLite consensus disorder prediction 9 27 - -
Glsi04g0279 414 SUPERFAMILY Protein kinase-like (PK-like) 75 367 IPR011009 -
Glsi04g0279 414 ProSiteProfiles Protein kinase domain profile. 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0279 414 FunFam Serine/threonine-protein kinase PBS1 167 382 - -
Glsi04g0279 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Glsi04g0279 414 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Glsi04g0279 414 SMART serkin_6 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0279 414 Gene3D Transferase(Phosphotransferase) domain 1 167 385 - -
Glsi04g0279 414 Pfam Protein kinase domain 95 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0279 414 MobiDBLite consensus disorder prediction 388 404 - -
Glsi04g0279 414 MobiDBLite consensus disorder prediction 379 414 - -
Glsi04g0279 414 CDD STKc_IRAK 96 365 - -
Glsi04g0279 414 Gene3D Phosphorylase Kinase; domain 1 60 166 - -
Glsi04g0279 414 MobiDBLite consensus disorder prediction 1 27 - -
Glsi04g0279 414 PANTHER OS07G0668900 PROTEIN 3 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0279 Glsi-ChrGlsi04 1786475 1789030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0279 1 369 Glycoside Hydrolase AT3G07070 55.496 1.85e-145 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Glsi04g0279 Pkinase 2.1e-44 CL0016