Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0253 ATGATTAATTCAAGAGCAAAACCCATTAATCTGATAAAGCCAATTCCATTGCCCCGTTACTCCAACCAGACCCTGCTTCAGCTATTTCACGCTCTTCATTTCAACAATGTTCGAGCCAAACCCCGCCATGAACGACCTCAAATGCCTACTTCAAGGCTTCGCAAGCGCATACCTTTCATCACCCAAGTCAAAGAGGCGCAGGACCCAGAAGAAGCCTTGTCTCTCTTTCACGGGTACAAAAAACAGGGATTCAGGCACGATTACCCCTCCTACGCCGCATTACTCTACAAACTGGCTCGTTCTAGAAGCTTTAAATCTGTTGAAACTATTCTTACTCATATACAAGACAGAGGCATACACTGCAAAGAAACCATTTTCATTGCTTTATTTCAGCATTATGGTAAAGCCCAACTTCCAGAAAAAGCTGTGGAACTTTTTCATAGAATGCCCCAGTTCAATTGCGTCCGCACATTGCAGTCCTTCAATGCTCTTCTTAATGTTTTAATCGACAATCATAGGTTTACCGAAGCGAATGATACTTTCAGTCGATCGTATAAAATGGGTTTTCATCCAAACACGGTTTCTTTTAATATAATGATCAAGGGATGGTTGGGGAAGGATGAGTTGGGAAAAGCATGTGACGTGTTTGACGAAATGCTGAAGAAGAAAGTACAGCCAAGTGTTGTGACATATAATAGTCTCATTGGGTTCTTCTCCAGAAAGGGTGATTTAAGTAGAGCAAAGGCGTTGCTTGACGATATGAACCAGAAAGGAAAATACCCAAATGATGTAACTTATGCATTGTTGATGGAGGGTTTGTGTTCTGTGGACAAGCACGAGGAAGCTAAGAAGCTAATGTTTGATATGGCATATCGAGGGTGCAAACCTCGGCTAGTCAATTTCGCTGTGTTGATGAATGACCTGGGAAAGAGAGGAAAGATTGAGGAGGCAAAATCTCTACTTTATGAGATGAAAAAAAGGCGGTTTAAGCCAGATGTTGTAATCTACAATATATTAATAAATTATCTATGCAAGGAAGGAAAGACAGCAGAAGCTTACAAAGTCTTAATTGAGATGCAGATTAGGGGTTGTGAGCCAAATGCCGCTACATACAGGATGATAGTTGATGGTTTCTGCCAGATTGGGGATTTTGAGCCAGGTTTGAATGTTTTGAATGCAATGCTATCAAGTAAACATTGTCCACGTTCAGAAACATTTAATTGTTTGGTTGTGGGTCTATTGAACTGTGGTAAGATTGATGATGGTTGCTTTGTTTTGGAAGAGATGAAGAAAAGAAAGGTGCAAGTTGGTTTGGAGAGTTGGGAAACCATTGTGAAGTATGCTTGTGGTGAGGATAAAAATGCAAATCGGCTTATAAATGACCTTACATCCATTCATCAATTGCGTTAG 1410 0.4064 MINSRAKPINLIKPIPLPRYSNQTLLQLFHALHFNNVRAKPRHERPQMPTSRLRKRIPFITQVKEAQDPEEALSLFHGYKKQGFRHDYPSYAALLYKLARSRSFKSVETILTHIQDRGIHCKETIFIALFQHYGKAQLPEKAVELFHRMPQFNCVRTLQSFNALLNVLIDNHRFTEANDTFSRSYKMGFHPNTVSFNIMIKGWLGKDELGKACDVFDEMLKKKVQPSVVTYNSLIGFFSRKGDLSRAKALLDDMNQKGKYPNDVTYALLMEGLCSVDKHEEAKKLMFDMAYRGCKPRLVNFAVLMNDLGKRGKIEEAKSLLYEMKKRRFKPDVVIYNILINYLCKEGKTAEAYKVLIEMQIRGCEPNAATYRMIVDGFCQIGDFEPGLNVLNAMLSSKHCPRSETFNCLVVGLLNCGKIDDGCFVLEEMKKRKVQVGLESWETIVKYACGEDKNANRLINDLTSIHQLR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0253 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Glsi04g0253 469 Pfam PPR repeat 128 154 IPR002885 -
Glsi04g0253 469 Pfam PPR repeat 405 433 IPR002885 -
Glsi04g0253 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Glsi04g0253 469 Gene3D Tetratricopeptide repeat domain 207 325 IPR011990 GO:0005515
Glsi04g0253 469 Pfam Pentatricopeptide repeat domain 250 311 IPR002885 -
Glsi04g0253 469 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 68 356 - -
Glsi04g0253 469 Gene3D Tetratricopeptide repeat domain 326 399 IPR011990 GO:0005515
Glsi04g0253 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Glsi04g0253 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Glsi04g0253 469 Gene3D Tetratricopeptide repeat domain 59 206 IPR011990 GO:0005515
Glsi04g0253 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Glsi04g0253 469 NCBIfam pentatricopeptide repeat 405 435 IPR002885 -
Glsi04g0253 469 NCBIfam pentatricopeptide repeat 194 227 IPR002885 -
Glsi04g0253 469 NCBIfam pentatricopeptide repeat 264 296 IPR002885 -
Glsi04g0253 469 NCBIfam pentatricopeptide repeat 334 368 IPR002885 -
Glsi04g0253 469 NCBIfam pentatricopeptide repeat 128 156 IPR002885 -
Glsi04g0253 469 NCBIfam pentatricopeptide repeat 302 333 IPR002885 -
Glsi04g0253 469 NCBIfam pentatricopeptide repeat 370 401 IPR002885 -
Glsi04g0253 469 NCBIfam pentatricopeptide repeat 229 262 IPR002885 -
Glsi04g0253 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Glsi04g0253 469 Pfam PPR repeat family 191 235 IPR002885 -
Glsi04g0253 469 Pfam PPR repeat family 331 380 IPR002885 -
Glsi04g0253 469 SUPERFAMILY TPR-like 154 356 IPR011990 GO:0005515
Glsi04g0253 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0253 Glsi-ChrGlsi04 1611983 1613392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0253 64 464 Glycosyltransferase AT1G05670 25.310 1.94e-44 164