Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0249 ATGGCAGGGTGCGGAAACAGAAGCAGGAGAAGAGCTGAAGGGGGAAGAGTACATAGAGATAGAAAAGAGTGTGATCTCTGTTGCCGTTTGGGTTGCGGTAATCGATCGAGAAGAAAGGGAAAGCAAACGATGGAGATTGATCTTACTCCTCAGTTGGCTAAGCAGGTGTACGGAGGCAATGGTGGGTCCTACTATGCTTGGTGCCCATCTGAGCTTCCCATGTTACGCCAAGGCAACATTGGTGCGGCCAAGCTCGCCCTTGAGAAGAATGGTTTTGCGCTTCCTCGCTACTCTGACTCTTCCAAGGTTGCATACGTTCTCCAAGGAAAAGGAGTTGCTGGAATCGTACTCCCTGAACAAGAAGAGAAGGTAATTGCAATTAAGAAGGGCGATGCGGTAGCACTCCCTTTTGGTGTTGTGACATGGTGGTACAATAAGGAGGATACTGAGTTGGTTGTTCTTTTCATGGGTGACACTTCAAAAGGTCACAAGGCTGGGGAATTTACTGACTTTTTTCTGACTGGTTCTAATGGAATCTTCACCGGGTTTTCTACCGAGTTTGTTGGCAGAGCTTGGGACTTGCAAGAGAAGGATGTTAAGACCCTTGTTGGAAACCAATCAGGCAAAGGCATTGTGAAGCTTGATGGAAATATCAGCCTTCCTGAGCCAAAGGAGGAACATCGTAAGGGTATGGCATTGAACTGTGAAGAGGCTCCGTTGGATGTTGACATTAAGAATGGTGGAAGGGTGGTAGTGTTGAACACCAAGAATCTTCCATTGGTTGGTGAGGTTGGACTTGGAGCAGACCTTGTTAGGTTGGATGGAAGTGCCATGTGCTCTCCTGGATTTTCTTGCGATTCTGCCTTGCAGGTTACTTATATTGTCAGAGGGAGTGGCCGAGTTCAGGTTGTTGGTGTTGATGGCCGCAGGGTTTTGGAGGCAACTTTAAAAGCTGGTAACCTGTTCATTGTACCAAGGTTTTTTGTAGTCTCAAAGATTGGTGATCCTGATGGAATGGAGTGGTTCTCTATCATCACCACCCCAAATCCTATTTTTACCCACATGGCTGGAAGTTCTTCAGTGTGGAAGGCTTTATCTCCTACGGTTCTGCAGGCTGCTTTCAATGTGGATTCAGGAGTTGAACAGCTCTTCCGTTCAAAGAGGACTGCTGATGCCATTTTCTTTCCTCCACCAAAGTAG 1200 0.4708 MAGCGNRSRRRAEGGRVHRDRKECDLCCRLGCGNRSRRKGKQTMEIDLTPQLAKQVYGGNGGSYYAWCPSELPMLRQGNIGAAKLALEKNGFALPRYSDSSKVAYVLQGKGVAGIVLPEQEEKVIAIKKGDAVALPFGVVTWWYNKEDTELVVLFMGDTSKGHKAGEFTDFFLTGSNGIFTGFSTEFVGRAWDLQEKDVKTLVGNQSGKGIVKLDGNISLPEPKEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGRRVLEATLKAGNLFIVPRFFVVSKIGDPDGMEWFSIITTPNPIFTHMAGSSSVWKALSPTVLQAAFNVDSGVEQLFRSKRTADAIFFPPPK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0249 399 CDD cupin_11S_legumin_C 241 396 - -
Glsi04g0249 399 PRINTS 11-S seed storage protein family signature 359 376 IPR006044 GO:0045735
Glsi04g0249 399 PRINTS 11-S seed storage protein family signature 337 355 IPR006044 GO:0045735
Glsi04g0249 399 PRINTS 11-S seed storage protein family signature 301 317 IPR006044 GO:0045735
Glsi04g0249 399 PRINTS 11-S seed storage protein family signature 319 334 IPR006044 GO:0045735
Glsi04g0249 399 PRINTS 11-S seed storage protein family signature 254 274 IPR006044 GO:0045735
Glsi04g0249 399 SMART Cupin_1_3 238 382 IPR006045 -
Glsi04g0249 399 SMART Cupin_1_3 46 200 IPR006045 -
Glsi04g0249 399 SUPERFAMILY RmlC-like cupins 58 388 IPR011051 -
Glsi04g0249 399 Gene3D Jelly Rolls 238 399 IPR014710 -
Glsi04g0249 399 Gene3D Jelly Rolls 34 237 IPR014710 -
Glsi04g0249 399 PANTHER OS03G0336100 PROTEIN-RELATED 42 398 - -
Glsi04g0249 399 Pfam Cupin 242 378 IPR006045 -
Glsi04g0249 399 Pfam Cupin 54 199 IPR006045 -
Glsi04g0249 399 CDD cupin_11S_legumin_N 47 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0249 Glsi-ChrGlsi04 1573612 1578684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0249 78 376 Miscellaneous Gene Families AT2G18540 21.777 9.96e-08 52.4