Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0245 ATGCTCTCAAGTATTAAAGCATTTGAAGCTACTCGTGTCTATAAGATCCGCCCTTTCTTCCCATCACAAACCCTAGAGACGGCTAGTTCTTCTGCTGCCCGCACGCAGGTAGACTCACTTTTTCAGCAACCCATGGCTCCGGCAAAAGTTGATAGTTCAAAAAAGACTGATCCAAAGGCACAGGCCTTGAAAACTGCTAAAGCAGTTAAGTCAGGACCTACCTTCAAGAAGAAGGCCAAGAAAATCCGAACATCTGTCACATTCCATCGGCCAAAGACATTGAAAAAGGATAGGAACCCCAAATACCCTCGTATTAGTGCTCCGCCAAGGAATAAGCTTGATCATTATCAAATTTTGAAATACCCTCTCACCACTGAGTCAGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGATCTACGTGCTGACAAGAAGAAGATAAAGGATGCAGTGAAGAAAATGTATGACATTCAAGCCAAGAAAGTGAATACCTTGATCAGGCCTGATGGCACCAAGAAAGCCTATGTCAGATTGACACCTGATTATGATGCCTTGGATGTAGCAAACAAGATTGGGATTATCTAA 597 0.4238 MLSSIKAFEATRVYKIRPFFPSQTLETASSSAARTQVDSLFQQPMAPAKVDSSKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0245 198 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 115 191 IPR012678 GO:0003735|GO:0005840|GO:0006412
Glsi04g0245 198 Pfam Ribosomal protein L23, N-terminal domain 59 108 IPR005633 -
Glsi04g0245 198 Pfam Ribosomal protein L23 118 180 IPR013025 GO:0003735|GO:0005840|GO:0006412
Glsi04g0245 198 ProSitePatterns Ribosomal protein L23 signature. 176 191 IPR001014 GO:0019843
Glsi04g0245 198 Gene3D - 79 198 IPR012677 -
Glsi04g0245 198 PANTHER 60S RIBOSOMAL PROTEIN L23A 50 198 IPR013025 GO:0003735|GO:0005840|GO:0006412
Glsi04g0245 198 NCBIfam 50S ribosomal protein L23 122 198 IPR019985 GO:0003735|GO:0005840|GO:0006412
Glsi04g0245 198 Hamap 50S ribosomal protein L23 [rplW]. 118 198 IPR013025 GO:0003735|GO:0005840|GO:0006412
Glsi04g0245 198 FunFam 60S ribosomal protein L23a 77 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0245 Glsi-ChrGlsi04 1549251 1552310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0245 45 198 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 88.312 1.15e-70 210