Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0239 ATGAAAATGGTTCAACAAGAAATCCGAAAAGGTCCATGGACAGAACAGGAGGACATCAAATTGGTCTCCTTTGTCGGCTTGTTTGGTGACCGGAGATGGGATTTTATAGCCAAAGTTTCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTGCATCCTGGTCTCAAAAGGGGGAAGATGACACCCCAAGAAGAGCGCCTTGTCCTGGAGCTTCACTCAAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAATTACCTGGGCGCACAGACAATGAGATTAAGAATTACTGGAGAACTCACATGAGGAAGGAGGCCCAGGAGAAAAAACGAGCAGCCATTTCGTCACCAACGACCTCTAGTTGTCATTCCTCGCTATCATCAAATAACCATACGGTGGATTCATATCCTTCCAAAAAGACTGGTGAAGAAAGCTTTTATGATACAGGAGGTCCTAATATGACATCCTCCACCGAAATAAAGATAGGAGAAGACCAAGTAGATGAACAGGGGTACTCTATGGATGATATATGGAAAGATATTGCTTTGTCAGAGGAGAACATTCTGCAGCCAGTCTATGATGGGCACAGTGAAGAGGGCTGCAACTTCTCTTGTCCTCCAATGCCTTCTCCATCATGGGAGTACTCCTCAGACTCGCTGTGGGGGATGGATGAGGAGGAGAGTAAGATTTTTCTCCCTATAGTTGCCCAAACTTTTTCCTGTTACGAGCAAGGGAGAGCATCTCTAACCGGCTAA 774 0.4522 MKMVQQEIRKGPWTEQEDIKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKEAQEKKRAAISSPTTSSCHSSLSSNNHTVDSYPSKKTGEESFYDTGGPNMTSSTEIKIGEDQVDEQGYSMDDIWKDIALSEENILQPVYDGHSEEGCNFSCPPMPSPSWEYSSDSLWGMDEEESKIFLPIVAQTFSCYEQGRASLTG 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0239 257 FunFam MYB transcription factor 65 131 - -
Glsi04g0239 257 CDD SANT 65 108 IPR001005 -
Glsi04g0239 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Glsi04g0239 257 Gene3D - 10 62 - -
Glsi04g0239 257 FunFam Myb transcription factor 10 62 - -
Glsi04g0239 257 CDD SANT 12 57 IPR001005 -
Glsi04g0239 257 MobiDBLite consensus disorder prediction 112 164 - -
Glsi04g0239 257 MobiDBLite consensus disorder prediction 118 142 - -
Glsi04g0239 257 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Glsi04g0239 257 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 135 IPR044676 GO:0003700|GO:0006355|GO:0043565
Glsi04g0239 257 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Glsi04g0239 257 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Glsi04g0239 257 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Glsi04g0239 257 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Glsi04g0239 257 SMART sant 9 59 IPR001005 -
Glsi04g0239 257 SMART sant 62 110 IPR001005 -
Glsi04g0239 257 Gene3D - 66 109 - -
Glsi04g0239 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0239 Glsi-ChrGlsi04 1526069 1527072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0239 1 255 MYB Transcription Factor Family AT5G59780 60.938 1.18e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0239 Myb_DNA-binding 6.9e-15 CL0123