Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0235 ATGAAGAGAGGCAGAGAATTAGGGGGTGAGGTAGATAGCTTAGACATGGCTAATTGTTTGATGTTACTATCCAAAGTTGGCGAAACCCATTACCCACCCACAGAATTAAAGGGTAGTAAGGGTGCTTTTAAGTGCAAAACTTGCAATAGGCAGTTCCCTTCATTTCAAGCCCTTGGAGGCCACAGAGCCAGCCACAAGAAGCCGAAGCTCATGATGGGTGCAGGTCTTTCTTACCAGTTTCCCAGCACGAAGCCAAAGATGCACGAGTGCCATATTTGTGGGCTTGGGTTTGGCATCGGACAAGCGCTGGGAGGGCACATGAGGAAGCATAGAGCTGCCATTAACCATGGTTTGGTGAGTCATGCTGCCATGGCGCCGGTGGCCTTGGGCAAATCCAATAGTAAAGGGATTGATTTGCACTTGGACTTGAACACCACGCCATTGGATATTGATTTGGAGCTTGACTTAAGGCCCCCCTTGGTGAATTGTTTTATTTAA 498 0.4799 MKRGRELGGEVDSLDMANCLMLLSKVGETHYPPTELKGSKGAFKCKTCNRQFPSFQALGGHRASHKKPKLMMGAGLSYQFPSTKPKMHECHICGLGFGIGQALGGHMRKHRAAINHGLVSHAAMAPVALGKSNSKGIDLHLDLNTTPLDIDLELDLRPPLVNCFI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0235 165 SUPERFAMILY beta-beta-alpha zinc fingers 43 110 IPR036236 -
Glsi04g0235 165 SMART c2h2final6 43 65 IPR013087 -
Glsi04g0235 165 SMART c2h2final6 88 110 IPR013087 -
Glsi04g0235 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Glsi04g0235 165 PANTHER ZINC FINGER PROTEIN ZAT5 12 147 - -
Glsi04g0235 165 Pfam C2H2-type zinc finger 42 68 - -
Glsi04g0235 165 Pfam C2H2-type zinc finger 88 112 - -
Glsi04g0235 165 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Glsi04g0235 165 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Glsi04g0235 165 Gene3D Classic Zinc Finger 40 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0235 Glsi-ChrGlsi04 1493552 1494049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0235 1 161 C2H2 Transcription Factor Family AT3G53600 43.605 8.16e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g0235 zf-C2H2_6 1e-08 CL0361