Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0228 ATGACCCTTGATGATATCATCAAGAACAATAAGAAGACTGGATCCGGTAACTTCAGAGGCCGTGGTCGAGGATCCGGTCCCGGCCCTGCTCGCCGCTTCCCCAACCGTGCCGCTAGTCGCACCGCACCTTATACCACTGCTAAGGCACCGGAGTCGACTTGGCAGCATGATATGTTTGCGGATCAGCCTGCGGCACCGTACGCAGTTCAAGGTGGTCGAGCCTCTTCCATAGAAACGGGGACCAAGCTCTACATATCTAATTTGGATTACGGTGTTTCGAACGAGGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGTATACAATTCATTACGACAGGAGTGGCAGATCTAAGGGTACTGCAGAAGTAGTCTATTCACGACGAGCTGATGCTATAGCTGCAGTGAAGAGATACAACAATGTTCAACTTGACGGTAAACCAATGAAGATAGAGATTGTGGGGACAAACATTGCTACACCTGCTGCAGCTCCTGCTCTGAATGGAGCTATTGGAAATTCAAATGGAGTTCCTAGAATTGTACAAGGGAGAGGTGGGGCATCTGTAAGGTCACGTGGTGGAGGTAGTGGTGGAGGTAGAGGGCGTGGCTTGCGAGGGGGTCGAGGCCGTGGAAGAGGTCGTGGAGAAAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATTCAGAGGCAATGCAAATAAACTGA 723 0.4938 MTLDDIIKNNKKTGSGNFRGRGRGSGPGPARRFPNRAASRTAPYTTAKAPESTWQHDMFADQPAAPYAVQGGRASSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYTIHYDRSGRSKGTAEVVYSRRADAIAAVKRYNNVQLDGKPMKIEIVGTNIATPAAAPALNGAIGNSNGVPRIVQGRGGASVRSRGGGSGGGRGRGLRGGRGRGRGRGEKVSAEDLDADLEKYHSEAMQIN 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0228 240 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 238 - -
Glsi04g0228 240 Gene3D - 67 223 IPR012677 -
Glsi04g0228 240 MobiDBLite consensus disorder prediction 211 233 - -
Glsi04g0228 240 SUPERFAMILY RNA-binding domain, RBD 10 155 IPR035979 GO:0003676
Glsi04g0228 240 MobiDBLite consensus disorder prediction 1 53 - -
Glsi04g0228 240 SMART FoP_duplication_2 169 240 IPR025715 -
Glsi04g0228 240 MobiDBLite consensus disorder prediction 181 240 - -
Glsi04g0228 240 Pfam C-terminal duplication domain of Friend of PRMT1 186 235 IPR025715 -
Glsi04g0228 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 151 IPR000504 GO:0003723
Glsi04g0228 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 158 IPR000504 GO:0003723
Glsi04g0228 240 MobiDBLite consensus disorder prediction 1 16 - -
Glsi04g0228 240 CDD RRM_THOC4 81 155 - -
Glsi04g0228 240 Coils Coil 222 240 - -
Glsi04g0228 240 SMART rrm1_1 82 154 IPR000504 GO:0003723
Glsi04g0228 240 FunFam THO complex subunit 4 74 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0228 Glsi-ChrGlsi04 1449284 1452009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0228 80 155 Eukaryotic Initiation Factors Gene Family AT1G71770 34.211 2.44e-09 55.5