Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0211 ATGGGAGGGTCGAGTGGGACTCCAGCGAGTTCGCGATGGAACCCTACAAAAGAGCAAATAAGCATGTTAGAGAATCTGTATAAGCAGGGCATAAGAACGCCCAGTGCTGAGCAAATACAGCAGATAACTGCAAGGCTCAGGGCGTATGGTCACATCGAAGGCAAGAATGTCTTCTATTGGTTTCAGAATCACAAAGCAAGGCAGAGGCAGAAGCAAAAGCAAGAGAGCATCGCTTATTTCAATCGCTTTCTTCATAGGTCTCACCCAATTTTCTCTTCGCCACTTTGCCCCAATGTGCTTTGCACCCCATATTACCTGCCACATAGTGAAATGGGGTTTTATTCTCAACATCCAAAGGTGCTTCTTGCTGGAGCTATTAGGAAAAGTCCAGTGAATGAGAAAGTTGTGCCGATGGCGATGCCTAGAAGCTTTGATAACCTCCATGTATACGAACAAATGCAACAGAGAATACAAGATAACTTGAGCAACCATGAAACACTGGCACTCTTTCCTCTGCAACCAACTGGCATTTTGGAAGAGAAAACAATGGAGCAGGTGGCTTCTCAGGCTTCAGTTTCTGCTGATAGTTCCACTGCTTCTCCTTCTGGTTCTCCTGATATTGATGAAGAAGACGGTCGCCCTGAAAACCAACCCTTCTTTGATTTTCTTTCTGCAGCCCTCGCCCCTCCTGGATGCAGGATGCTCGTCCCCTACCTCTCTTCCCTTGCCCTTGGTGTGGTGATCAGCCCACCCATCTCAACTCTTGCATTCAGTATTATTGTTCTGGAGTTGCCACTTCTACGTACAACTAACTACGTTGTGCCAATTTAA 831 0.4645 MGGSSGTPASSRWNPTKEQISMLENLYKQGIRTPSAEQIQQITARLRAYGHIEGKNVFYWFQNHKARQRQKQKQESIAYFNRFLHRSHPIFSSPLCPNVLCTPYYLPHSEMGFYSQHPKVLLAGAIRKSPVNEKVVPMAMPRSFDNLHVYEQMQQRIQDNLSNHETLALFPLQPTGILEEKTMEQVASQASVSADSSTASPSGSPDIDEEDGRPENQPFFDFLSAALAPPGCRMLVPYLSSLALGVVISPPISTLAFSIIVLELPLLRTTNYVVPI 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0211 276 SMART HOX_1 8 75 IPR001356 GO:0003677
Glsi04g0211 276 FunFam WUSCHEL-related homeobox 4 10 77 - -
Glsi04g0211 276 CDD homeodomain 12 72 IPR001356 GO:0003677
Glsi04g0211 276 ProSiteProfiles 'Homeobox' domain profile. 6 71 IPR001356 GO:0003677
Glsi04g0211 276 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 5 199 IPR044555 GO:0003700|GO:0099402
Glsi04g0211 276 Pfam Homeodomain 10 70 IPR001356 GO:0003677
Glsi04g0211 276 MobiDBLite consensus disorder prediction 188 204 - -
Glsi04g0211 276 SUPERFAMILY Homeodomain-like 8 78 IPR009057 -
Glsi04g0211 276 MobiDBLite consensus disorder prediction 188 215 - -
Glsi04g0211 276 Gene3D - 2 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0211 Glsi-ChrGlsi04 1357384 1359691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0211 4 226 Wox Gene Family AT5G59340 46.825 6.50e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Glsi04g0211 Homeodomain 4.6e-19 CL0123