Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0208 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAGGAACAAAATCATCATCAAGCAAATGGCAGTGAAAGCCCTCGGCTGCTTCCACATGCGGGAGCTGGTGCTGGATCAATCCGGCCAGGCTCGATGGCTGATCGAGCCCGATTAGCTAAGATACCGCCACCGGAGGCAGCTCTGAAGTGTCCCCGTTGCGAATCCATCAATACTAAGTTTTGCTATTTCAACAATTACAGCTTATCTCAACCCCGACACTTCTGCAAGACATGTAGGCGTTACTGGACAAGAGGGGGTGCTCTTAGGAGCGTCCCGGTGGGTGGTGGATGCCGTAGAAACAAGAAGAACAAAAGAAGCCGCTCCAAATCTCCAGCTGGCACAGACAAACAGACTCTTCACACTCCCACAAGTGCAATCCCATCTGGAGGCAACACCACCGAGCTAATTGGCCAGTTACAGCAACCATCTAGCTTGCCTTACATGGCCTCTTTACAGAACCTGAGCCGCTATGGTGCAGGAAACATGGGTCTGAATCTGCGTGAGATCCTAGCCCAAACTGACCATATGGGGTTCCAAATGGGAGGAGGTAGTTCAGTTGTAGGTGATGGAGGAGTGGAGCAGTGGCGGTCACAGCAATTCCCTTTCTTGAATGCTGAATCATACCCATTTCAAAGCGAGAGTACTACTGTTGAAGCAGCAAATGGTATGGTTGTTGGGGATAGCGCACTTGGGAGTGTAGCTACAAGTTCTAGGGTTACTCAGCTACCACCAGTTAAGATGGAAGATAACGGAGCTCTAAATTTTTCAAGATCGCCTCTGAGTAACCAATACTATTCATGGACTGATTTGTCAGGTCTTGCCTCTTCTTCCACTAGCCACCTCTTGTAA 897 0.4894 MVFSSIPVYLDPPNWQQEQNHHQANGSESPRLLPHAGAGAGSIRPGSMADRARLAKIPPPEAALKCPRCESINTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKNKRSRSKSPAGTDKQTLHTPTSAIPSGGNTTELIGQLQQPSSLPYMASLQNLSRYGAGNMGLNLREILAQTDHMGFQMGGGSSVVGDGGVEQWRSQQFPFLNAESYPFQSESTTVEAANGMVVGDSALGSVATSSRVTQLPPVKMEDNGALNFSRSPLSNQYYSWTDLSGLASSSTSHLL 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0208 298 MobiDBLite consensus disorder prediction 128 147 - -
Glsi04g0208 298 MobiDBLite consensus disorder prediction 13 27 - -
Glsi04g0208 298 MobiDBLite consensus disorder prediction 108 147 - -
Glsi04g0208 298 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 207 IPR045174 GO:0003700|GO:0006355
Glsi04g0208 298 Pfam Dof domain, zinc finger 63 118 IPR003851 GO:0003677|GO:0006355
Glsi04g0208 298 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
Glsi04g0208 298 MobiDBLite consensus disorder prediction 13 44 - -
Glsi04g0208 298 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0208 Glsi-ChrGlsi04 1343335 1344401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0208 1 292 C2C2-Dof Transcription Factor Family AT2G37590 37.427 3.20e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi04g0208 zf-Dof 4.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1827 14 18501638 18502690 Glsi04g0208 04 1343335 1344401 CCT