Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0207 ATGGAGGACGACAAAGCAGCCATAGCACGGACCTCGATTGACTTGGTGAATGAGACAGCTGCGATCTTAGATTACAGGAGCACGGTCAAGAAGCAGTATTGCAATTTGGCGAGAAGGTTGAAGCTGTTGACTCCAATGTTCGAAGAGATTAGGGACAGCAAAGAGGCGTTCCCTGAAGAGACTTTAAAAGCTTTGCTTTCCTTCAAGGAAGCTTTAGAATCGGCTAAGGAACTTCTTAGATTTGGGAGCGAAGGGAGTAAGATTTACATGGTCCTGGAGAGGGACCAAATTATGAATAAATACTATGAGGTGACAGCACAATTAGAACAAGCCTTGAGTAGCATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTTTATCCCAATTCAGAAGAGCCAAAGGAAGGGTTGATGCACCGGATGTTGAGTTGTATGAGGATCTCTTGTCACTTTACAATAAATGCAGTGATGCAGCTACAGATCCAGCTGTTCTAAGGAGATTAGCTGAAAAACTGCAGTTGATGGGAATAACTGATCTTACACAAGAGTCTCTAGCCTTGCATGAGATGGTGGCAGTAAGTGGTGGGGATCCAGGGGCAAGCATTGAGAAGATGTCAATGTTATTGAAAAAAATAAAGGATTACGTGCAAACAGAGAATCTAGACATGGATGATAATGAAGGAGGAAAAGGCCTTTCTTCAAGTTGCAGCAGACAATGGGCAAGCGAAAAAGGTTATCAGGCCCCTATTATCCCTGATGATTTTCGTTGTCCAATTTCCCTGGAATTGATGAAGGATCCAGTAATTGTTTCGACGGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGGAAGCAGGGCATGGGACCTGTCCAAAAACACAGCAGACCCTCACCAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTCATATCGCAGTGGTGTGAAGCCAATGGCATAGAACCTCCAAAACGACCTAGCAGTTCCCGGCCTAGTAAATCAGCATCTGCATGCTCACCAGCTGAGCGTAGTAAGATTGAAAATCTTCTCCGCAAGCTTACATCTGGCAATCCTGAAGACCAGAGGTCAGCTGCAGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCAGATAACCGTGTGGCCATTGCTGAAGCTGGTGCAATACCTCTCCTTGTTGGCCTCCTCTCCACACCTGACTCCCGAATTCAAGAGCACGCTGTAACAGCACTTTTGAATCTTTCCATTTGTGAGAATAACAAAGGAAGTATCATATCTTCTGGGGCAGTTCCTGGTATAGTTCATGTGCTCAAGAAGGGCAGCATGGAAGCTCGGGAAAATGCGGCAGCAACACTTTTCAGCCTTTCAGTCGTAGATGAAAACAAGGTTACTATTGGATCTTCAGGAGCCATCCCACCACTAGTGACGCTGCTTAGCGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATATATCAGGGTAACAAGGGAAAGGCGGTGAGGGCTGGTGTTGTTCCCACACTGATGCGACTGCTGACAGAACCTGGTGGAGGAATGGTTGATGAAGCATTAGCCATATTGGCAATATTGGCTAGCCATCCTGAAGGGAAGGCTGCAATTGGTGCTGCAGAGGCAGTGCCGGTTTTGGTAGAGGTTATTGGGAATGGATCGCCAAGGAACAAAGAGAATGCAGCTGCCGTTTTAGTGCACCTTTGTTCTGGAGATCAGCAATATCTAGCACAGGCTCAAGAGCTCGGGTTGATGGGTCCATTGATGGATCTGGCTCAAAATGGCACAGACAGAGGCAAGAGAAAGGCTGCACAATTGATTGAGCGTATGAGCAGGCTCCTTGAGCAGCAGCAGGAAGTTCAAACCCAGACTGAACTTCAAGCTCAGAACCAGGATATACCGCCTTCAATTACTAACCTTGTTGATAGCTGA 1989 0.4625 MEDDKAAIARTSIDLVNETAAILDYRSTVKKQYCNLARRLKLLTPMFEEIRDSKEAFPEETLKALLSFKEALESAKELLRFGSEGSKIYMVLERDQIMNKYYEVTAQLEQALSSISYDKLDISDEVKEQVELVLSQFRRAKGRVDAPDVELYEDLLSLYNKCSDAATDPAVLRRLAEKLQLMGITDLTQESLALHEMVAVSGGDPGASIEKMSMLLKKIKDYVQTENLDMDDNEGGKGLSSSCSRQWASEKGYQAPIIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLTSTVLTPNYVLRSLISQWCEANGIEPPKRPSSSRPSKSASACSPAERSKIENLLRKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPEGKAAIGAAEAVPVLVEVIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQELGLMGPLMDLAQNGTDRGKRKAAQLIERMSRLLEQQQEVQTQTELQAQNQDIPPSITNLVDS 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0207 662 Gene3D - 7 118 IPR036537 GO:0007166
Glsi04g0207 662 FunFam RING-type E3 ubiquitin transferase 532 650 - -
Glsi04g0207 662 SMART arm_5 467 507 IPR000225 GO:0005515
Glsi04g0207 662 SMART arm_5 591 631 IPR000225 GO:0005515
Glsi04g0207 662 SMART arm_5 426 466 IPR000225 GO:0005515
Glsi04g0207 662 SMART arm_5 508 548 IPR000225 GO:0005515
Glsi04g0207 662 SMART arm_5 385 425 IPR000225 GO:0005515
Glsi04g0207 662 SMART arm_5 549 589 IPR000225 GO:0005515
Glsi04g0207 662 FunFam RING-type E3 ubiquitin transferase 341 492 - -
Glsi04g0207 662 MobiDBLite consensus disorder prediction 335 351 - -
Glsi04g0207 662 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Glsi04g0207 662 SUPERFAMILY RING/U-box 258 334 - -
Glsi04g0207 662 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Glsi04g0207 662 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Glsi04g0207 662 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Glsi04g0207 662 Gene3D - 351 532 IPR011989 -
Glsi04g0207 662 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Glsi04g0207 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Glsi04g0207 662 MobiDBLite consensus disorder prediction 330 353 - -
Glsi04g0207 662 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Glsi04g0207 662 PANTHER U BOX DOMAIN-CONTAINING 28 631 - -
Glsi04g0207 662 CDD RING-Ubox_PUB 259 311 IPR045210 -
Glsi04g0207 662 CDD MLKL_NTD 13 138 - -
Glsi04g0207 662 Coils Coil 619 642 - -
Glsi04g0207 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Glsi04g0207 662 Pfam Neurochondrin 520 646 IPR008709 -
Glsi04g0207 662 SUPERFAMILY ARM repeat 356 632 IPR016024 -
Glsi04g0207 662 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Glsi04g0207 662 Gene3D - 533 650 IPR011989 -
Glsi04g0207 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Glsi04g0207 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0207 Glsi-ChrGlsi04 1335522 1340050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0207 1 662 U-box Gene Family AT3G46510 72.481 0.0 960
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0207 04 1335522 1340050 Glsi04g0207 04 1335522 1340050 ECH