Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi04g0205 | ATGCACCAGACTACTGTCTACGATCGCCATTCTGCTCTTCATATAGCTGCTGCTAATGGTCAGATCGAGATTCTGTCTATGCTGTTAGATGGATCTGCTAATCCAGATGTTTTAAATCGTCAAAAGCAGACTCCGCTTATGTTGGCTGCAATGCACGGAAAGATCGCCTGTGTGAAAATGCTCCTTGAAGTTGGAGCTAATGTATTGATGTTTGATACGCTTTATGGAAGAACCTGCTTGCACTATGCAGCCTACTATGGTCATTCTTCTTGCCTTAAAGCAATTCTTTCTGCTGCACAATCTAGTCCAGTGGCTGCTTCCTGGGGATTTGCTCGGTTTGTGAATATTAGAGATGGCAGGGGAGCAACGCCGTTGCACTTGGCAGCTCGTCAAAGACGGCCTGAATGTGTGCATATTCTATTAGACAATGGAGCTCTTGTCTGTGCTTCAACCGGCGGATACGGCTGTCCTGGGAGCACTCCTCTTCATTTAGCAGCCAGAGGGGGATCTCTGGATTGCATCCGTGAGCTATTAGCATGGGGTGCAGATCGTCTTCAACGTGATGCTTCTGGGAGGATACCATATGTAGTTGCTCTGAAACGCAAACATGGAACATGTGCAGCGTTGCTAAATCCTACATCTGCTGAACCGCTTGTCTGGCCTTCACCTTTGAAGTTCATCAGTGAGCTTAATCCGGATGCCAAAGCTTTATTAGAACGGGCCTTGATGGATGCAAACAGGGAAAGGGAGAAAAATATTTTGAAAGGAAGTGCTTACTCTCTGCCATCTCCATCACATTCTGATGATGGGATAGATTGTAGTATCTCTGAGGCCAGTGAGACGGAATTATGCTGCATCTGCTTTGAGCAGGTATGCACAATTGAAGTTCAGGACTGTGGCCACCAGATGTGTGCACAATGTACCCTATCCCTCTGTTGCCACAACAAGCCCAATCCTGCTACTGCTTCTCTTACCCCACCAGTTTGTCCATTTTGCCGAAGCACCATAGCTAAACTGGTGGTTGTGAAGATAGAAAGTCCTGATGACACAGATCTAGATGCTGGTGATATCAGTTCTTCCAAGTTAAGCAAGTCCAGAAAATCCCGAAACTTGAACGAGGCTGGCAGTAACAGCTTCAAGGGACTATCATTTGGAAAGATGGGTGGCCGCAGCTCTGGAAGGATAGCTGCTGAAAATGAGTGGGTTGATAAACAGTGA | 1218 | 0.4663 | MHQTTVYDRHSALHIAAANGQIEILSMLLDGSANPDVLNRQKQTPLMLAAMHGKIACVKMLLEVGANVLMFDTLYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLDNGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYVVALKRKHGTCAALLNPTSAEPLVWPSPLKFISELNPDAKALLERALMDANREREKNILKGSAYSLPSPSHSDDGIDCSISEASETELCCICFEQVCTIEVQDCGHQMCAQCTLSLCCHNKPNPATASLTPPVCPFCRSTIAKLVVVKIESPDDTDLDAGDISSSKLSKSRKSRNLNEAGSNSFKGLSFGKMGGRSSGRIAAENEWVDKQ | 405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi04g0205 | 405 | SUPERFAMILY | RING/U-box | 278 | 338 | - | - | |
| Glsi04g0205 | 405 | Gene3D | - | 2 | 74 | IPR036770 | - | |
| Glsi04g0205 | 405 | MobiDBLite | consensus disorder prediction | 353 | 405 | - | - | |
| Glsi04g0205 | 405 | ProSiteProfiles | Ankyrin repeat region circular profile. | 157 | 183 | - | - | |
| Glsi04g0205 | 405 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 346 | IPR013083 | - | |
| Glsi04g0205 | 405 | ProSiteProfiles | Ankyrin repeat profile. | 157 | 189 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | ProSiteProfiles | Ankyrin repeat region circular profile. | 41 | 68 | - | - | |
| Glsi04g0205 | 405 | ProSiteProfiles | Ankyrin repeat region circular profile. | 120 | 145 | - | - | |
| Glsi04g0205 | 405 | SUPERFAMILY | Ankyrin repeat | 8 | 213 | IPR036770 | - | |
| Glsi04g0205 | 405 | ProSiteProfiles | Ankyrin repeat profile. | 41 | 73 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | Gene3D | - | 75 | 258 | IPR036770 | - | |
| Glsi04g0205 | 405 | ProSiteProfiles | Zinc finger RING-type profile. | 284 | 333 | IPR001841 | - | |
| Glsi04g0205 | 405 | Pfam | Ankyrin repeats (many copies) | 158 | 195 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | ProSiteProfiles | Ankyrin repeat profile. | 120 | 152 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | ProSiteProfiles | Ankyrin repeat profile. | 8 | 40 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | Pfam | Ankyrin repeats (3 copies) | 75 | 146 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | Pfam | Ankyrin repeats (3 copies) | 9 | 71 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | SMART | ANK_2a | 75 | 105 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | SMART | ANK_2a | 41 | 70 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | SMART | ANK_2a | 157 | 186 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | SMART | ANK_2a | 8 | 37 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | SMART | ANK_2a | 120 | 149 | IPR002110 | GO:0005515 | |
| Glsi04g0205 | 405 | PANTHER | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED | 75 | 194 | - | - | |
| Glsi04g0205 | 405 | ProSiteProfiles | Ankyrin repeat region circular profile. | 8 | 40 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi04g0205 | Glsi-ChrGlsi04 | 1326722 | 1329178 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi04g0205 | 12 | 174 | Miscellaneous Gene Families | AT5G02620 | 31.953 | 2.82e-15 | 75.9 |