Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0200 ATGGAAATTGGCGAGGAAGGCGGCATGGAGGATGATGTGTGGGGCCAGCTCACCATAGAAACAGCTTGGGCCTCAAGAGTCAAAATCCACCTCGATGCTCGAATTTTCCTTCCTAACAACACTTCTCGTGTCCCACTTCTTCCCTGGGCTCGGCTAATCCCAAATAATGGAGCTTTTGAAGCCTTCGCATCCTCCTCGGCATGTAGCCACCGCAGACCCCTTTACGAGTTCTCGTCGTCGCTGAATTTACACTTCGGCTCGCCAGGGGTGGCCATATCTCGAGTACACGAGGCTATGGCAGAATGTGCTGAAACGGTGCACGTAGCTGTTGGAAAATCGGTGGGCAAAGCTGTCAATTTGCTTCAATGGACTTTCAGCCGGTTTAGGAACGCACAAATTTGCATACTTCATGTTCATCAACCTTCTTCTGTTATCCCCACTCTTTTGGGAAATTTGCCAGCAACCCAAGCAAATCCTGAGGTCGTGTCCGCTTTTAGAAGAGACGAAAGAGAACAAACCAAAAGGCTTTTGGAAAATTACTTGAGCATTTGCCATGCAGCTAAGGTTAAGGCAAGCAATGTCATAGCTGAAGCTGATCAAGTGCAGAAAGGGATTGTTGATTTAATTATTAGGCATGGTATTAGGAAGCTTGTTATAGGAGCAGTACCAGCAAATTGCAGGAAGGTGAAAAGGAATTCCAGAAAAGCAAATTATGCTGCCAAGAATGCTCCCAGATTCTGTGAAATATGGTTTATCCACAAAGGTAAACACATATGGACAAGAGAAGCCTCTGAAAAACCTTGTTCTTTGACTTCACATGCTCAACCTGAGATTATAGTCTCAGACAGTTTAAGATCTAGATCATTTCAATATGGTAAGAATGATGTATTCCAATCAGGGTGTCTTCGATCAAATTCTGCGAGAACTATAATCTGTACTGGAACTGCTAGTTGGTCTACTAGTGAAATCCTTGAAACAGATGCAACTTTTTCATCCAAATTGTCCAGTTCCCCCCAAAATTCTGCTGAGGGGTATTTAGAAACTCATTTGGAGGTTGAAGAGGAAAGAATTCATAGTCAACTCACGGAAGCCATAATAGGAGTTGAATCAGCGACAGATGAGGCTTTTGCAGAGCTATTGAAGTGCCAAAAGTTGGAAGCAGAAGCCATGGAGGCCATAAGGAGGATCAATATGCTTGAATCTGCCCATGCATCTGAAGTAAAGCTAAGAAAGGAGGCAGAGGATGCACTGCGAAATACAGTACAGGAGCAACAGAAGCTCTTGGATGAGAGTGAAGAAGTTGCTAGTGTGCTACAGAGGACCATGAGAAACATTGCCCTTCTAGACACCCGTGCACGAGAAGCAAACCATAGGAAAGATGAAGCTGCAGATGAACTATTACTAATTCAAGCATCCATCTCAACCCTGTGGCATGAAAAGCAGCAGATCAGGCGGCAAAAAATGGAAGCCCACCGCTGGCTTGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGTTGTGCACTGCCATGGATTCATTGGGTTTGCTGAAGAGTTACCTGAGTTAGCAGAATTTTCATTATCAGATCTTCAAAATGCTACATGCAATTTTTCTGAGAGCTTCAAAATTGGGCAGGGTGGATATGGTTGTATTTATAAGGGGGAAATGTTGGGTAGAACTGTTGCTATAAGGAAGCTCCATTCACATAACATGCAGGGACCAGCTGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATCTGTTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCACTCGTATATGAGTACTTGCCTAATGGGAGTCTTCAAGACCACCTATTTCGAAAAAGCAACAATTCCCCTCTGACATGGAATAGCCGAGCACGTGTGATTGCTGAAATTGCCAGTGCTCTCTGCTTCTTACACACTTCCAAACCCAAAACTATAGTCCATGGTGATCTGAAGCCTGAAACTATACTTCTTGATTCTGGACTTAGTTGTAAGATATGTGAATTTGGGTTCTGCCGGCTGGTGACAGAGGAGTCACTTTATCGACCTAGTTTCAGTTTCAGCACTGAGCCAAAGGGTGCTTTTTCATATTCAGATCCAGAGTTTCATAGAACTGGACTACTAACACCCAAGTCTGACATCTATTCCTTTGGACTCATCATTTTGCAACTCCTCACTGGTAGGACTCCAGTTGGGTTAGCAGGTGAAGTACGCAAGGCAGTTTCATGTGGGAATTTGTCTTCAATTCTGGATCCTGCAGCTGGAGAATGGCCTCCATCTGTGGCAACACGATTGGTTGAGCTGGGACTGCAATGCTGTCAACAAAATGGCAGAGACAGACCAGAGCTAACACCAACTTTGGTGAGAGAATTGGAGCAACTGCATGTTTCAGAAGATCGACCTGTGCCATCTTTTTTCTTGTGTCCCATCCTTCAGGAAATAATGAATGATCCTCAGCTTGCAGCAGATGGATTCACTTATGAAGGGGAAGCCATACGTGAATGGTTGGAAAATGGGCATGAAACTTCTCCCATGACTAATTTGAAATTGACTCACCTGCATCTCACTCCTAATCATGCACTTCGTCTTGCGATCCAAGACTGGCTTTGCAAATCCTGA 2643 0.4465 MEIGEEGGMEDDVWGQLTIETAWASRVKIHLDARIFLPNNTSRVPLLPWARLIPNNGAFEAFASSSACSHRRPLYEFSSSLNLHFGSPGVAISRVHEAMAECAETVHVAVGKSVGKAVNLLQWTFSRFRNAQICILHVHQPSSVIPTLLGNLPATQANPEVVSAFRRDEREQTKRLLENYLSICHAAKVKASNVIAEADQVQKGIVDLIIRHGIRKLVIGAVPANCRKVKRNSRKANYAAKNAPRFCEIWFIHKGKHIWTREASEKPCSLTSHAQPEIIVSDSLRSRSFQYGKNDVFQSGCLRSNSARTIICTGTASWSTSEILETDATFSSKLSSSPQNSAEGYLETHLEVEEERIHSQLTEAIIGVESATDEAFAELLKCQKLEAEAMEAIRRINMLESAHASEVKLRKEAEDALRNTVQEQQKLLDESEEVASVLQRTMRNIALLDTRAREANHRKDEAADELLLIQASISTLWHEKQQIRRQKMEAHRWLERWKSRGQVGVVHCHGFIGFAEELPELAEFSLSDLQNATCNFSESFKIGQGGYGCIYKGEMLGRTVAIRKLHSHNMQGPAEFHQEVQVLGSLQHPHLLTLLGVCPEAWSLVYEYLPNGSLQDHLFRKSNNSPLTWNSRARVIAEIASALCFLHTSKPKTIVHGDLKPETILLDSGLSCKICEFGFCRLVTEESLYRPSFSFSTEPKGAFSYSDPEFHRTGLLTPKSDIYSFGLIILQLLTGRTPVGLAGEVRKAVSCGNLSSILDPAAGEWPPSVATRLVELGLQCCQQNGRDRPELTPTLVRELEQLHVSEDRPVPSFFLCPILQEIMNDPQLAADGFTYEGEAIREWLENGHETSPMTNLKLTHLHLTPNHALRLAIQDWLCKS 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0200 880 Gene3D Transferase(Phosphotransferase) domain 1 609 809 - -
Glsi04g0200 880 PANTHER OS02G0152300 PROTEIN 105 874 - -
Glsi04g0200 880 Coils Coil 445 465 - -
Glsi04g0200 880 SUPERFAMILY RING/U-box 807 879 - -
Glsi04g0200 880 SMART Ubox_2 813 876 IPR003613 GO:0004842|GO:0016567
Glsi04g0200 880 ProSiteProfiles U-box domain profile. 809 880 IPR003613 GO:0004842|GO:0016567
Glsi04g0200 880 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 119 222 - -
Glsi04g0200 880 Gene3D Phosphorylase Kinase; domain 1 513 608 - -
Glsi04g0200 880 Gene3D HUPs 95 222 IPR014729 -
Glsi04g0200 880 Pfam Protein tyrosine and serine/threonine kinase 541 792 IPR001245 GO:0004672|GO:0006468
Glsi04g0200 880 ProSiteProfiles Protein kinase domain profile. 536 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0200 880 ProSitePatterns Protein kinases ATP-binding region signature. 542 564 IPR017441 GO:0005524
Glsi04g0200 880 Pfam U-box domain 810 879 IPR003613 GO:0004842|GO:0016567
Glsi04g0200 880 Coils Coil 410 441 - -
Glsi04g0200 880 CDD STK_N 105 255 - -
Glsi04g0200 880 CDD RING-Ubox_WDSUB1-like 811 866 - -
Glsi04g0200 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 880 IPR013083 -
Glsi04g0200 880 Coils Coil 382 402 - -
Glsi04g0200 880 SUPERFAMILY Protein kinase-like (PK-like) 520 797 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0200 Glsi-ChrGlsi04 1305468 1312165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0200 104 877 U-box Gene Family AT2G45910 38.356 1.76e-180 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Glsi04g0200 PK_Tyr_Ser-Thr 4e-35 CL0016