Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0197 ATGGAGTCCACTGTTCAATTTCAGGACAATAAACCAGGATGCATGTGGGGCTTACTTCATATGCTTGACACCCATCATTGGCATAACGTCAAAAAGGTTTTTCCTCACAAAAAGCATCCCTGGGGAAGACATGCCAGACATCAGAGAAAACCCACTCTTGACAACCGTAGTATTAGTGAAGACCAACAAGTTGGGGATGCAGAAGCAAAACCCCTCCTGGTTAGGCAACATAGCAAGAAAGTAAGTGCTACTGGCAAAAGAACTACCAGAAGTCGCAAAAAAGGATTACATACTGAAAGTAGATCTAAAGAAGAAAGTTCCAAAGGTTGGATCTTGAGCTTTCATGCTGGACGACAACATTTGGGGTCTTCAGATAAATCTTCCGTGGATTACTCTAGGCAGAACCATGCTCCTCGTGAGTATGAACTTCCTCTGGAGAAAGATGTCAAGACAAGGGAATTTGTGCTTAGCCAAAAGCTCAAGGAAGCAAATAAACTTAATAGAGACGTTTCCGATAAATTTAAGGAGCATATTGATGTTTTTGAGGCTACCAACAACAAAGCAAGATTGACAAAATCAGGGTCATTTCCTCTCGCAACATCTTCGCAAATGAGGAACATTAACCCAAGCACCCTCAATCACAAGCAAAATGAAATTTGGGCTTTCCCAAAGGGGGAAAAGTTGCTTGCTGGTACCCAAGCAAACAAAATGTTCGCATCCAGCTTTGCAAAAGATATTTCTTATATGAAGGCAGTGCCATTAGCGAGTGATCACGGGATGGACAGTGCCATGAAACAAAATCCAGGCTTTTCTTTTTCAAGAACTTCTTTGGATTATAACACAAATGCTGAAACTGATATTCTTGTTCAAAGAAAGTCAGTGAGCGTTCCTGTAAATAAAGACAAACCATTCGGTCCTACTTCAGAGACTGAAATTCATAAAATGGTAGAAAACAGTGGAAAGGATGTGACTCCCAATCCTTTATCGGAGAAAAATGATGAGGGACAGAGGGAGGACATACATGAACCGGAGGTGGAAGATGGAAGTTTTACCCAAGAAAATGAGGAAATAGAAACGACTATCAATCTTGGCAAGGATGCCATGGCAGTTACTGAAACTAGCTATGAAGACAATGCAGCCAACGTTGCAAAAGGTACAGAGAGAAATACCAGAGGCTCTAGCATGGAAGAAATGGACATTGATTTACTAAATACAGGAAATAGATATACTTTGCCAGCAGAAGATACAAACAAGAGTCGTGAAAGATATGTCCTTTTCTTTGAATCAGATGTAGAAAACGATTCCGATTTCAAATATGTCAAGCATATTATTGAATTCTCGGGTTTCATGGAAGATGAGCATACTCAAATGCGGCACTCAGTGAACCAACCCCTGAAGCCCTCCTTATTCAAGGATTTGGAAGCTTCTCTGCGCGAAGAGATTGAATGCTCTGGAGAAGAGATTGGCAAACCCTCTGATCATCAGCTTCTATTTAATATAGTTAACGAGGTACTTCTTGAAATATGTGAGGGATCATCAACCTACTTCCCGAGGCCCTTCTCCTTCAACCACCGCCTTCATCCAATGCCTAAGGGAAGCCATCTTCTTAAGGAAGTGTGGACCAGAGTTAACTCGTACCTGAGCTTGAGGCCAGAGCTAGATCAGACATTAGACGATGTTGTGGGGCGAGATTTGGCGAGAAGTGGCTGGATTAACCTCCAATGGGAAGAGGAGAATGTGGCACTTGAACTAGAGGACATGATTGAGTTGTTGCTTACACCTTTGAGATTTATAGTTCATTGCCCTGTACTGGTTAGGAGTAAAGACATTGATAACAAAGCATTCATAGAGCAAAAGTTTTTCTCTTTCGAGACGCCCATTTTTGCTGTACGCCCACGCAATCAGGCTTCAATCGTAGAGCAAGAAATTTGTATCACAGTATCGGTTAATGGTGAGGAGGGGATTGCTCAGCGCATGTTTGGACAGGCGATGGGAGAAAATTTCGTCATCTTCTGTCGGCCGCTATTGACGAAGGAGCGAGCTGTCGAAGTGGTCCTTGATTTCAAGTCGCTGCTGAGCTCTGTCGAAGCCGTCATTGGTGAACAGATGCAAATGTTGGTCTTCAGGCCAAGATCCCTTCGATATATAGAAGCTTTTACGAAATTATCTACGTCCAGATGGTCTTTTACACTTTATTCTTGTTTCTCGGATACTCCTCACAAGAAATCCAAGCTTGCTCCTCTGCAGGAGAGAAGAATGATAGATAGGTTTAAGATATTTGCCAAAGGAGGTGATGGCGGTAATGGTTGCTCCAGTTTCCGGCGTAGCCGCCATGATCGCCGAGGCAGACCTGATGGTGGGAATGGTGGAAGAGGAGGTGATGTGATTTTGGAATGCTCCCCCACAGTTTGGGATTTCAGTGGCTTGCAGCATCACCTGATAGCAGAGAAAGGGAGACATGGGGAGTCAAAGAATAAGATAGGAACCAGAGGCGCTGATAAGGTTGTCCATGTACCAGTCGGCACTGTGATTCATCTTGTCAAGGGTGATATGCCTTCTACAGTTAAGATTCAATCTTTAACGGATGTTGATCCTTGGGAGATTCCCGGTGCACTTGTTGACGATCTTTCTGACCCTAATGATGGCTCTATCTTTAATATCGCAAGTGGTAAAGAGCAAGTCAAAGCACTACATTCTGCAGGAAGCTCTTCATCAACTAATGCATCATGCATAATTCCCAAATTTGTCTCAGATGCTGAAGGAGAACAAGAGACGCTATACAATGTTGCTGAATTGACAGAAGAGGGTCAACAAGTTATTGTTGCTCGTGGTGGAGAGGGTGGTCTGGGTAACACGTCTGTTTCCAAAGATTCAAGGAAGCCTGTGACAGTTAAAGTAGGGGCCTGTAAAGATATTGTATCCAATCTTCAGGATTCGGATGATGATAACTCCTCCCTAAGTGCTGGTTTGCCTGGTTCTGAGACTGTTCTTATATTAGAACTAAAGAGCATTGCTGATGTAAGCTTTGTGGGAATGCCTAATGCTGGTAAAAGCACTCTACTTGGGGCCATATCAAGGGCTAAGCCTACTGTTGGTCACTATGCCTTCACAACTCTTAGACCCAACTTGGGGAATCTGAACTATGATGACTTATCAATAACAGTGGCCGACATTCCAGGACTTATCAAGGGTGCACACGAAAATCGTGGACTTGGACATGCATTTCTGCGCCATATAGAACGCACAAAGGTTCTGGCTTATGTGGTAGACTTGGCTGCTGCTTTAGATGGAAGAAAGGGAATTCCACCGTGGGAACAATTGAAAGATTTGATTTTAGAGCTTGAGTACCATCAGGAGGGTTTATCCAATCGACCATCCTTGGTTGTGGCAAATAAGATTGATGAGGAAGGGGCAGACGAAGTGTACGAAGAGTTGCAGAGACGAGTGCAAGGTGTTCCCATATTTCCCGTGTGTGCTGTTTTGGAGGAAGGGATACCAGAGCTTAAAGCTGGCCTTAGGATGCTTGTCAACGGTGAAAAGCCATGCAGGCTTGGCTTAGATCAAATTTTGCTCCATTAG 3579 0.4359 MESTVQFQDNKPGCMWGLLHMLDTHHWHNVKKVFPHKKHPWGRHARHQRKPTLDNRSISEDQQVGDAEAKPLLVRQHSKKVSATGKRTTRSRKKGLHTESRSKEESSKGWILSFHAGRQHLGSSDKSSVDYSRQNHAPREYELPLEKDVKTREFVLSQKLKEANKLNRDVSDKFKEHIDVFEATNNKARLTKSGSFPLATSSQMRNINPSTLNHKQNEIWAFPKGEKLLAGTQANKMFASSFAKDISYMKAVPLASDHGMDSAMKQNPGFSFSRTSLDYNTNAETDILVQRKSVSVPVNKDKPFGPTSETEIHKMVENSGKDVTPNPLSEKNDEGQREDIHEPEVEDGSFTQENEEIETTINLGKDAMAVTETSYEDNAANVAKGTERNTRGSSMEEMDIDLLNTGNRYTLPAEDTNKSRERYVLFFESDVENDSDFKYVKHIIEFSGFMEDEHTQMRHSVNQPLKPSLFKDLEASLREEIECSGEEIGKPSDHQLLFNIVNEVLLEICEGSSTYFPRPFSFNHRLHPMPKGSHLLKEVWTRVNSYLSLRPELDQTLDDVVGRDLARSGWINLQWEEENVALELEDMIELLLTPLRFIVHCPVLVRSKDIDNKAFIEQKFFSFETPIFAVRPRNQASIVEQEICITVSVNGEEGIAQRMFGQAMGENFVIFCRPLLTKERAVEVVLDFKSLLSSVEAVIGEQMQMLVFRPRSLRYIEAFTKLSTSRWSFTLYSCFSDTPHKKSKLAPLQERRMIDRFKIFAKGGDGGNGCSSFRRSRHDRRGRPDGGNGGRGGDVILECSPTVWDFSGLQHHLIAEKGRHGESKNKIGTRGADKVVHVPVGTVIHLVKGDMPSTVKIQSLTDVDPWEIPGALVDDLSDPNDGSIFNIASGKEQVKALHSAGSSSSTNASCIIPKFVSDAEGEQETLYNVAELTEEGQQVIVARGGEGGLGNTSVSKDSRKPVTVKVGACKDIVSNLQDSDDDNSSLSAGLPGSETVLILELKSIADVSFVGMPNAGKSTLLGAISRAKPTVGHYAFTTLRPNLGNLNYDDLSITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLAAALDGRKGIPPWEQLKDLILELEYHQEGLSNRPSLVVANKIDEEGADEVYEELQRRVQGVPIFPVCAVLEEGIPELKAGLRMLVNGEKPCRLGLDQILLH 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0197 1192 Pfam 50S ribosome-binding GTPase 1007 1132 IPR006073 GO:0005525
Glsi04g0197 1192 MobiDBLite consensus disorder prediction 327 348 - -
Glsi04g0197 1192 SUPERFAMILY Obg GTP-binding protein N-terminal domain 753 967 IPR036726 -
Glsi04g0197 1192 MobiDBLite consensus disorder prediction 772 787 - -
Glsi04g0197 1192 PRINTS GTP1/OBG GTP-binding protein family signature 1007 1027 IPR006073 GO:0005525
Glsi04g0197 1192 PRINTS GTP1/OBG GTP-binding protein family signature 1028 1046 IPR006073 GO:0005525
Glsi04g0197 1192 PRINTS GTP1/OBG GTP-binding protein family signature 1055 1070 IPR006073 GO:0005525
Glsi04g0197 1192 PRINTS GTP1/OBG GTP-binding protein family signature 1072 1090 IPR006073 GO:0005525
Glsi04g0197 1192 MobiDBLite consensus disorder prediction 768 793 - -
Glsi04g0197 1192 Pfam GTP1/OBG 754 846 IPR006169 -
Glsi04g0197 1192 Pfam Domain of unknown function (DUF4378) 436 588 IPR025486 -
Glsi04g0197 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1006 1174 IPR027417 -
Glsi04g0197 1192 Gene3D - 1004 1182 IPR027417 -
Glsi04g0197 1192 MobiDBLite consensus disorder prediction 38 108 - -
Glsi04g0197 1192 Gene3D GTP1/OBG domain 753 1003 IPR036726 -
Glsi04g0197 1192 ProSiteProfiles Obg domain profile. 751 1004 IPR006169 -
Glsi04g0197 1192 MobiDBLite consensus disorder prediction 299 353 - -
Glsi04g0197 1192 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 1005 1177 IPR031167 GO:0005525
Glsi04g0197 1192 CDD Obg 1005 1176 IPR031167 GO:0005525
Glsi04g0197 1192 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 739 1173 IPR045086 GO:0003924|GO:0005525
Glsi04g0197 1192 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0197 Glsi-ChrGlsi04 1286940 1294684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0197 346 588 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 34.100 7.63e-33 135