Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0189 ATGCGGAACGACTTAATTTTAATTTATTGTATTTTCCATTATCATCTGAAACTAAATGAACAAGGTGGAAAAGGCATGGCCTACCTTCTTCCTCCCACAACCTTACGCGAATGCCTCCGAGCGTATAGAGCGGTTTTGACGAAGACAACACAGCATCACTCGCATTGGTTAAAACCTCTATTGGGGCACTGTCGGAAGTGGAGTTTGGGAGAAGAAGAAGAAAATATGGGTTTCTTGTGTCGTCAACACTCAACACTAGGGTCCAAGTTCATGGGGCGAAGTGTTCAGTTCTGCATACAACAGACAAATTCACTGCAAAAAGGGCAAAACGTCAAAAGAATTAGTGTTGTTTCTGGCATGGGAGTTTGTTTGAGCGCTCAAATTAAAGCAGAGAGCACATGTAACCCTGGGGTTAATTCAAAACATGTGAGCACAGATGGAAATGATCTCAGCAGCACAGATCGTAAGGTCTCAACAGTCTCAGTGCCTCAGACTTCTCGGAGTGAGGGCGAGATCTTGCAGGCCCCCAATTTAAAGAGCTTTACTTTCGCAGAACTTAAGACGGCCACAAGGAATTTCCGTCCAGATAGTGTTTTGGGAGAAGGCGGTTTTGGATCTGTCTTTAAGGGGTGGATTGATGAGCATTCATTGGCTGCTGCCAAACCTGGCACTGGCATTATTATTGCTGTTAAAAGACTTAACCAAGATGGTATCCAGGGTCACAAGGAGTGGTTGGCTGAAGTGAACTATCTTGGACAATTTTCGCATCCTCATCTTGTAAAACTGATCGGATATTGCCTTGAAGATGAGCACCGCCTTCTGGTATATGAATTTATGCCCCGAGGCAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCTTATTTCCAACCTCTTTCTTGGGACCTCCGCTTGAAGGTTGCTCTTGGTGCCGCGAAAGGGCTTGCATTTCTTCACAGTGCCGAAACAAAAGTGATATATAGGGACTTTAAAACAGCAAATATCTTGCTGGATTCAGATTACACTCCAAAACTTTCTGATTTTGGGCTGGCCAAGGATGGACCAGCAGGGGACAAAAGTCACGTCTCCACCAGGGTTATGGGAACCTATGGATATGCAGCTCCCGAATATCTTGCCACTGGTCACCTAACTGCCAGGAGTGATGTGTATAGTTTTGGAGTTGTGCTGCTGGAAATGTTATCAGGTCGCCGAACAGTCGACAAGAATCGACCATCTGGGCAGCACAATTTGGTGGAATGGGCTAAGCCAAACCTGGCTAACAAACGTAAGATTTTTCGTGTGATGGATAGCCGTCTTGAAGGCCAGTATACAATAGATGAGGCCTTTAAGGCAGCTACCCTCGCATTGCGATGCATATCCCCGGAATCCAAGTTCAGGCCAAACATGAATGAGGTGGTTACAGCATTGGAGGAGCTGCAGGGGGCTCCCAATGTAAATGGAGGCAATAAAAACCCTTCTGTTAATGGATACCGTGCTAGGAGGAGAAGTGCAGATGATGCTAAAAATGGGAGGACCACCATTGCTTATCCACGTCCCTCTGCTTCCCCTCTCTATGCTTGA 1578 0.4601 MRNDLILIYCIFHYHLKLNEQGGKGMAYLLPPTTLRECLRAYRAVLTKTTQHHSHWLKPLLGHCRKWSLGEEEENMGFLCRQHSTLGSKFMGRSVQFCIQQTNSLQKGQNVKRISVVSGMGVCLSAQIKAESTCNPGVNSKHVSTDGNDLSSTDRKVSTVSVPQTSRSEGEILQAPNLKSFTFAELKTATRNFRPDSVLGEGGFGSVFKGWIDEHSLAAAKPGTGIIIAVKRLNQDGIQGHKEWLAEVNYLGQFSHPHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWDLRLKVALGAAKGLAFLHSAETKVIYRDFKTANILLDSDYTPKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYLATGHLTARSDVYSFGVVLLEMLSGRRTVDKNRPSGQHNLVEWAKPNLANKRKIFRVMDSRLEGQYTIDEAFKAATLALRCISPESKFRPNMNEVVTALEELQGAPNVNGGNKNPSVNGYRARRRSADDAKNGRTTIAYPRPSASPLYA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0189 525 Pfam Protein tyrosine and serine/threonine kinase 197 474 IPR001245 GO:0004672|GO:0006468
Glsi04g0189 525 Gene3D Transferase(Phosphotransferase) domain 1 279 493 - -
Glsi04g0189 525 MobiDBLite consensus disorder prediction 480 525 - -
Glsi04g0189 525 ProSitePatterns Protein kinases ATP-binding region signature. 199 231 IPR017441 GO:0005524
Glsi04g0189 525 FunFam Probable serine/threonine-protein kinase PBL8 279 494 - -
Glsi04g0189 525 CDD STKc_IRAK 199 478 - -
Glsi04g0189 525 Gene3D Phosphorylase Kinase; domain 1 168 278 - -
Glsi04g0189 525 ProSiteProfiles Protein kinase domain profile. 193 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0189 525 PANTHER OS01G0588500 PROTEIN-RELATED 153 479 - -
Glsi04g0189 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
Glsi04g0189 525 FunFam Serine/threonine-protein kinase BIK1 160 278 - -
Glsi04g0189 525 MobiDBLite consensus disorder prediction 136 169 - -
Glsi04g0189 525 SUPERFAMILY Protein kinase-like (PK-like) 167 474 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0189 Glsi-ChrGlsi04 1263938 1269563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0189 179 483 Glycoside Hydrolase AT3G07070 52.288 1.74e-106 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi04g0189 PK_Tyr_Ser-Thr 8.8e-44 CL0016