Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0188 ATGAAGTGCTTCCATTTCTCAAACGCAGAGAGACGGGAAGACGAAGACGGCATCGTCTCCAGGGCTTCCAGAATCTCGTGGGCTCGCTCTCTCAGCGTCGCTTCCAGTAGTATAGACACCAGAAGACCGGAATTTGACTCTGACTCCAGGGACTTCTATGATTCCATTGGGTTTCATGAGTTCTTATCTCAGAGGCGAGCTAATGATCTGCGCGTCTTTTCCCTCTCTGAGCTTAAATCGGCAACGCGTGGGTTCAGTAGGGCGCTCTTGATTGGCGAAGGCGGGTTTGGTTGCGTGTACAAAGGAGTACTCAGGGTACCCAATGAGGATGCAGATTATGCCTCTGATTCGAAGATGGATGTTGCAATCAAGCAGTTGAATCGTAATGGACACCAGGGGCATAAGGAGTGGATTAATGAAGTGAACTTGTTGGGTGTAGTCAAGCACCCAAATCTTGTCAAGTTAGTAGGATATTGCGCAGAAGATGATGAAAGAGGGATTCAACGACTTTTGGTCTATGAGCTTATGCGAAATAAAAGCTTGGAAGACCATCTTTTGGCTCGAGTACCATCAACGCTCACATGGATGGCAAGATTAAAAATTGCTCAAGACGCAGCCCGTGGTTTGGCTTACCTGCATGAAGAAATGGATTTTCAGCTAATATTTCGGGATTTTAAGACATCCAACATTCTGTTGGACGACGACTTCAATGCAAAGCTTTCTGATTTTGGACTTGCTAGGCAAGGCCCCTCAGAAGGAGTTGGCCATGTCTCAACATCAGTTGTTGGCACCATAGGTTATGCTGCACCAGAGTATGTTCACACTGGTAAGCTGACTGCTAAGAGTGATGTCTGGAGCTTTGGTGTTGTTCTTTATGAGCTCATCACTGGGAGGCGAGCAGTAGAAAGAAACCTACCAAGAAATGAACAAAAGCTTTTGGAGTGGATAAGACCTAATATTTCTGACCCAAGGAAGTTCCATCTTATTATAGACCCACGACTTGAAAGACAGTATTGCATCAAATCAGCTCAGATACTTGCGAACCTAGCAAACAAGTGTCTCATGAAGCAGCCAAAGTCCCGTCCTAAAATGAGTGAGGTAGTTGAGATCCTTGGAAACATTATTAATGAGACAGTTTCTGCGGATGAATACATCCCTCAAGCTGTTGTGGTAACTGGAGAAGAAAAAGAAGTAAAGTTACCTCTAGAGGAGACTGAACCTGAACCAGTCAAACAGGGGAATAGTTATCTGAAGAAGGTTTGTGATATTAGAGAAATGGTCAGCTTGAGAAGCAAGTCTATTGGAAGGTTAGATTGGAAAAATTGGGCCCCTGGACTGGTAAGAACTTGGTGA 1353 0.4486 MKCFHFSNAERREDEDGIVSRASRISWARSLSVASSSIDTRRPEFDSDSRDFYDSIGFHEFLSQRRANDLRVFSLSELKSATRGFSRALLIGEGGFGCVYKGVLRVPNEDADYASDSKMDVAIKQLNRNGHQGHKEWINEVNLLGVVKHPNLVKLVGYCAEDDERGIQRLLVYELMRNKSLEDHLLARVPSTLTWMARLKIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDDDFNAKLSDFGLARQGPSEGVGHVSTSVVGTIGYAAPEYVHTGKLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQKLLEWIRPNISDPRKFHLIIDPRLERQYCIKSAQILANLANKCLMKQPKSRPKMSEVVEILGNIINETVSADEYIPQAVVVTGEEKEVKLPLEETEPEPVKQGNSYLKKVCDIREMVSLRSKSIGRLDWKNWAPGLVRTW 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0188 450 Pfam Protein tyrosine and serine/threonine kinase 91 371 IPR001245 GO:0004672|GO:0006468
Glsi04g0188 450 Gene3D Transferase(Phosphotransferase) domain 1 176 391 - -
Glsi04g0188 450 SUPERFAMILY Protein kinase-like (PK-like) 67 371 IPR011009 -
Glsi04g0188 450 ProSiteProfiles Protein kinase domain profile. 85 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0188 450 ProSitePatterns Protein kinases ATP-binding region signature. 91 124 IPR017441 GO:0005524
Glsi04g0188 450 CDD STKc_IRAK 91 374 - -
Glsi04g0188 450 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 176 384 - -
Glsi04g0188 450 FunFam Serine/threonine-protein kinase BIK1 58 175 - -
Glsi04g0188 450 Gene3D Phosphorylase Kinase; domain 1 59 175 - -
Glsi04g0188 450 PANTHER OS01G0588500 PROTEIN-RELATED 49 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0188 Glsi-ChrGlsi04 1259856 1262645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0188 71 372 Glycoside Hydrolase AT3G07070 50.329 1.87e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi04g0188 PK_Tyr_Ser-Thr 1.7e-48 CL0016