Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0180 ATGGATCCGCATTTTAACTCCACCTTCATCAATGAATTTAACTTAGACCAAGTGCCCGTTACCCTCAATTTAGATCAGTACCCAAACCCCATAAATGGAATTAAATCTAACGATCCATCCAGCTTGGAATCCATGGATAACCCATTTTCTCCACCTGATCCAAACTACACTGGATATCATGCTTCCCCGTCCACAATTAGTACAGATGAAGACTCTCCCTTGGATGAGAGTGACTTTTCTGGTACTGTGCTTCGGTACATAAACCAAATGCTTATGGAAGAGAATATGGAGGAGAAGCCCTGTATGTTTCATGATTCCTTGGCTCTCCAAGCTGCCGAGAAATCATTCTATGAGGTTATTGGTGAGAAGTACCCGTCTTCCTCTATCCAACGACATGATCATCTTCACAATAATCATAATGTTGACAGTTCAGACGACAATCTCTCTGGTAGCTTCAGTGATTACTATTGCAGTGGCAGTTATGGTGCTAGCAGTAGCAACTCTACCGATTCCCATCTGAGTAATGCTGATATTACAGACCACAAGCCTTCTATATTTCAGGCCACTTTTCCTGCTAATTTCGTTTTTCAGTCCAGTTCAACATCCGGTGCACAGGCTTCCATGCCCAATAGGAGTAGCTTCACTAATAGCACGAATGAAACTGTGGGGTCTTTCCTCACCGAGTCTTTAAATTCTACATTGCTTAGCAAGAGTGAGTCAGTATTGCAATTTGAGAGAGGTGTAGAGGAAGCCAGTAAGTTTCTTCCTAAGGATAATCCATTGATTATTGATCTGGAGAACAATACCTTCTCTCACCCTATCAGAAAGAGCCAGCAGGTAGTACGTAAGACGGAGAAAGGTAACAGGGAGCACTTGCCAACCGATTCAAAAGGGATGAAGAATCATGAACGGGAAGATGAGACATATTTCGAAGATGGGAGGAGCAACAAGCAGTCAGCAGTTTACGTGGAAGATAGTGAGCTGCCAGATTTATTTGATAAGGTACTGCTTGGCACCGGGTGGGGAAACGAAGTACCTTCTATGTGTATTTGCAATGAAAACCACCACAGTGGGCCAGACATGAATGTGCAGCAAAATGAAGAGTCAAACAAGTCTGGTGATGGAAAAACTCGAGTTAGAAAACAGAGCAAGCAAAATGAAGTTGTGGATCTGAGGACACTACTGATTTTGTGTGCACAAGCTGTTTCCTCTGATGATCGTATCCCTGCTAATGAGTTATTGAAGCAGATCAGGCAGCATTCCAGCTCACTCGGTGATGGATCTCAGAGGTTGGCCCATTGCTTTGCAAATGCCCTTGAAGCCCGCTTGGCTGGCACTGGTACCCAGATTTATACTGCTTTATCCTCGAAAAGAACTTCTGCTGCTGACATGGTAAAAGCTTACCAGATGTATATTTCAGCCTGCCCATTCAAGAAGCTTGCAATTATTTTGGCAAACCATACCATTTTGGGTCTAGCCAAAGATGTCGAAACACTTCATATTGTGGATTTTGGCATTCGTTATGGCTTCCAGTGGCCTGCCCTTATCTATCGTCTCTCAAAACGAACTGGTGGGCCCCCAAAGCTGCGTATCACAGGGATAGAGTTGCCGCAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGGAGACAGGGTGTCGCCTGGCAAGGTATTGTGAGCGCTTCAATGTTCCATTTGAGTATAATGCTATTGCACAAAAGTGGGAAACAATCAAAGTTGAGGACCTAAAGATAAAAAAAAATGAACTTCTAGTTGTGAACTGTCTGGTTCGATTTAAGAATCTACTTGATGAAACAGTTGTGTTGAATAGTCCAAGGGATGCTGTTTTAAATCTAATTAGGGAGATAAATCCCAATATATTTTTACATGCCATAGTCAACGGGTGCTATAATGCACCCTTCTTTGTGACCCGGTTCCGGGAGGCTCTGTTTCATTACTCTTCAATGTTTGATATGCTTGACACCAATGTTGCTCGTGAAGATCCAATGAGGTTGATGTTTGAGAAAGAATTCTTTGGGCGAGAGGTGATGAATATTATAGCTTGCGAGGGTTCTGAGAGGATTGAGAGGCCAGAGACATATAAGCAATGGCAGGTTCGGAACATGAGGGCTGGGTTTAAGCAGCTACCATTGGATCAACAGCTCATTAACAAACTAAGGGGCAAGTTGAGAGGCACGTACCACAGTGATTTCATGCTTAATGAAGATGGAAACTGGATGATACAAGGTTGGAAGGGCCGAATCATTTATGCTTCCTCTTGTTGGGTGCCAGCATAG 2295 0.4357 MDPHFNSTFINEFNLDQVPVTLNLDQYPNPINGIKSNDPSSLESMDNPFSPPDPNYTGYHASPSTISTDEDSPLDESDFSGTVLRYINQMLMEENMEEKPCMFHDSLALQAAEKSFYEVIGEKYPSSSIQRHDHLHNNHNVDSSDDNLSGSFSDYYCSGSYGASSSNSTDSHLSNADITDHKPSIFQATFPANFVFQSSSTSGAQASMPNRSSFTNSTNETVGSFLTESLNSTLLSKSESVLQFERGVEEASKFLPKDNPLIIDLENNTFSHPIRKSQQVVRKTEKGNREHLPTDSKGMKNHEREDETYFEDGRSNKQSAVYVEDSELPDLFDKVLLGTGWGNEVPSMCICNENHHSGPDMNVQQNEESNKSGDGKTRVRKQSKQNEVVDLRTLLILCAQAVSSDDRIPANELLKQIRQHSSSLGDGSQRLAHCFANALEARLAGTGTQIYTALSSKRTSAADMVKAYQMYISACPFKKLAIILANHTILGLAKDVETLHIVDFGIRYGFQWPALIYRLSKRTGGPPKLRITGIELPQPGFRPAERVQETGCRLARYCERFNVPFEYNAIAQKWETIKVEDLKIKKNELLVVNCLVRFKNLLDETVVLNSPRDAVLNLIREINPNIFLHAIVNGCYNAPFFVTRFREALFHYSSMFDMLDTNVAREDPMRLMFEKEFFGREVMNIIACEGSERIERPETYKQWQVRNMRAGFKQLPLDQQLINKLRGKLRGTYHSDFMLNEDGNWMIQGWKGRIIYASSCWVPA 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0180 764 MobiDBLite consensus disorder prediction 278 310 - -
Glsi04g0180 764 MobiDBLite consensus disorder prediction 31 78 - -
Glsi04g0180 764 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 319 755 IPR005202 -
Glsi04g0180 764 MobiDBLite consensus disorder prediction 31 70 - -
Glsi04g0180 764 ProSiteProfiles GRAS family profile. 382 762 IPR005202 -
Glsi04g0180 764 MobiDBLite consensus disorder prediction 276 310 - -
Glsi04g0180 764 Pfam GRAS domain family 391 761 IPR005202 -
Glsi04g0180 764 MobiDBLite consensus disorder prediction 359 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0180 Glsi-ChrGlsi04 1212542 1214836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0180 83 764 GRAS Transcription Factor Family AT1G07530 56.815 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Glsi04g0180 GRAS 1.4e-115 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0180 04 1212542 1214836 Glsi04g0180 04 1212542 1214836 ECH
Glsi10g1713 10 11601891 11603717 Glsi04g0180 04 1212542 1214836 ECH