Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0179 ATGGATCCAAACTTTGATGGAAGTCATGGATATATAAACGGCTATAACCTTGATGATGGCACCGTCGTCTCCGATCCAAACCATTTCCTTTATCTAGCGAACGACTGGGAATTCAATGAACAGTATCGGAACCCTCTTAATTTCACGGGTGATCCTTTTTTTCAACCTGATGCGGTTCCACTTAGTTTTGCTCCTCATTCAAGCGTGAACTTTGTTGGAGAGCAGTCAGTTTCAACCTGGACCGTGGACCCTGCTGAAGGTGTGTCAGATGTCGCAGCTACTGCTTCGACTTCGCTAGCGGATCCTTCCGGAGACGCTGACTTTTCAGAAACCATCAAGTACATCAGCCAGATTCTTATGGAAGAGAACTTTGAACGGAAGCCAAGCATGTTTTTTGATCCATTAAGTCTGCAAGTTACGGAGAAATCATTTTATGATGCTCTTAAAGAGAAGTATCCTCTTTCCCCAAATCAACACCCTCTCGACATTCATCAAAATCTTGATAGCCCAGATGGTAACTGTTCTGGAGGCAGTATTGATTCTGGCAGTAACAGTAGCAGCAGCAACAACAACTCGGACAATTCTCATGAGGTTAAGCCCTCTTCCCCGGATGCCCCAATTTCTGGTGATTATGCTTTCCAGTTAAATTCGCATTCCATCTCCCGGAAGCCCTCTCAACCTCCAAGTGCTTCCACTAATATCGGTGATGGACTGTTGGATTGGGATGCCTCTATTTCTAAGCTATTGGCTCAAAATATGTTTAGTGATGCAGAATCCGTCTCACAGTTTCAGAGGGGGTTGGAGGAAGCTAGCAAGTTTCTTCCTAGAGGAACTCAACTTGTCACTGGTCTGGAGAGCAACACGGTGCTTCCAGAGTCAAAGAGAGAGGCAGATAAGGCAGTGTTCAATATAGCAGAAGATGCTCGGGAGAACTCGCATGGATTAAAGGGTAGGAAGAATCATGAGCGTGAAACTGGTGATACAGAAGAAGGGAGAAGTAACAAGCAGACGGCAGTCTATGTTGACGAGAGTGATATATCAGAAATGTTTGATCGAGTGTTGCTTAGTGTTGAGAATGTTCCACTATGTGATGAACACAAAGGTTTGCAGAATGAAACAGTCAAAGCTATGGAGCAAAGTGAAAAGCCACATTCAACTGATGGAGGGAAGACTCGCTCTAAGAAACAAGGCAGGAAGAAGGAAACCGTGGATTTGAGGACTCTTCTGGTTCTATGTGCACAAGCTGTGTCTACTAATGACAGCAAGACTGCTAATGAACTACTAAAGCAGATTAGGCAGCACTCTTCCCCCTTAGGAGATGCACCACAGAGGTTGGCTCATTACTTCGCCAATGGCCTTGAGGTACGCTTGGTCGGTGCTGGTACTGGAACCCAATTATTTTATTCCTCCCTGAGCTCCAAGAGGATTTCCGCTGCTGATATGTTGAAAGCGTACAAGACTCTAATATCTGTCTGCCCTTTCAAGAAGTTTTCATACTTTTTTGCTAACAAATCCATCATGGAAGCAGCTGAAAAGGCAAAAGCCCTTCATATTATCGATTTTGGGATTCAATATGGTTTCCAGTGGCCAATACTTATTAAGTTTCTTTCGAAAAGAGCTGGTGGGCCTCCAAAGCTACGCATCACGGGGATAGAAATTCCCCAAGCTGGCTTTCGCCCAGCAGAAAGAATTGAGGAGACTGGTCGACGTCTAGCTAATTATTGCACACGCTTTGATGTTCCTTTTGAGTACAAAGCCATAGCATCACAACACTGGGAAACCATCCGAATGGAAGACCTTGAGATTGAGAGCAATGAGCTGCTTGCTGTGAACTGTCTGATGAGATTTAAGAATCTACACGACGAGACAATTGAAGTTAACAGTCCTAGAAATGCAGTTCTGAATTTAATCAGGAAGATTAATGCTGATATTTTTGTTCAATCCATTGTTAATGGATCCTACAATGCCCCTTTCTTTGCCACACGGTTCAGGGAGGCGCTGTTCCATTTTTCTGCAGTGTTTGATATGCTGGACACTCTCATACCCCGTGAAAATGAATGGAGGTCGATGATTGAGAGAGAGTTTCTGGGTCGGGAGGCCATGAATGTTGTAGCATGTGAAGGTATAGAGAGGGTTGAGAGGCCTGAGACATACAAAAAATGGCAGGTTAGGAATACAAGAGCTGGGATGGAAGGGCCGCATTTTGTGTGCTTCTACATGTTGGGTGCCGGCACAATGAGGTGTTACTGGAGTCTAGACTTATGTGAGAACTCATACTGGACTAGGTCATGGCATGCCTGGTGTACCCAATTTACTTAA 2319 0.4459 MDPNFDGSHGYINGYNLDDGTVVSDPNHFLYLANDWEFNEQYRNPLNFTGDPFFQPDAVPLSFAPHSSVNFVGEQSVSTWTVDPAEGVSDVAATASTSLADPSGDADFSETIKYISQILMEENFERKPSMFFDPLSLQVTEKSFYDALKEKYPLSPNQHPLDIHQNLDSPDGNCSGGSIDSGSNSSSSNNNSDNSHEVKPSSPDAPISGDYAFQLNSHSISRKPSQPPSASTNIGDGLLDWDASISKLLAQNMFSDAESVSQFQRGLEEASKFLPRGTQLVTGLESNTVLPESKREADKAVFNIAEDARENSHGLKGRKNHERETGDTEEGRSNKQTAVYVDESDISEMFDRVLLSVENVPLCDEHKGLQNETVKAMEQSEKPHSTDGGKTRSKKQGRKKETVDLRTLLVLCAQAVSTNDSKTANELLKQIRQHSSPLGDAPQRLAHYFANGLEVRLVGAGTGTQLFYSSLSSKRISAADMLKAYKTLISVCPFKKFSYFFANKSIMEAAEKAKALHIIDFGIQYGFQWPILIKFLSKRAGGPPKLRITGIEIPQAGFRPAERIEETGRRLANYCTRFDVPFEYKAIASQHWETIRMEDLEIESNELLAVNCLMRFKNLHDETIEVNSPRNAVLNLIRKINADIFVQSIVNGSYNAPFFATRFREALFHFSAVFDMLDTLIPRENEWRSMIEREFLGREAMNVVACEGIERVERPETYKKWQVRNTRAGMEGPHFVCFYMLGAGTMRCYWSLDLCENSYWTRSWHAWCTQFT 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0179 772 ProSiteProfiles GRAS family profile. 396 772 IPR005202 -
Glsi04g0179 772 MobiDBLite consensus disorder prediction 309 331 - -
Glsi04g0179 772 Pfam GRAS domain family 405 733 IPR005202 -
Glsi04g0179 772 MobiDBLite consensus disorder prediction 309 337 - -
Glsi04g0179 772 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 341 734 IPR005202 -
Glsi04g0179 772 MobiDBLite consensus disorder prediction 156 211 - -
Glsi04g0179 772 MobiDBLite consensus disorder prediction 374 400 - -
Glsi04g0179 772 MobiDBLite consensus disorder prediction 159 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0179 Glsi-ChrGlsi04 1207020 1209601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0179 111 730 GRAS Transcription Factor Family AT1G07530 52.322 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Glsi04g0179 GRAS 3.4e-103 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1846 14 18690575 18692923 Glsi04g0179 04 1207020 1209601 CCT