Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0178 ATGGATCCAAACTTCGATGGAAGTCATGGATATATAAACGGCTATAAACTTGATGATGGCACCGTCGTCTCCGATCCAAACCATTTCCTTTATCTAGCGAACGACTGGGAATTCAATGAACAGTATCGGAACCTTCTTAATTTCACGGGTGATCCTTTTTATCAACCTGATGCGGTTCCACTTAGTTTTGCTCCTCATCCAAGCGTGAACTTTGTAGGAGAGCAGTCAGTTTCAACCTGGACTGGGGACCCTGCTGAAGATGTGTCAGATGTCTCAGCTGCTGCTTCGACTTCGCTAGCGGATCCTTCCGGAGACGCTGACTTTTCAGAAACCATCAAGTACATCAGCCAGATTCTTATGGAAGAGAACTTTGAACGGAAACCAAGCATGTTTTTTGATCCATTAAATCTGCAAGTCACGGAGAAATCATTTTATGATGCTCTTAAAGAGAAGTATCCTCTTTCGCCAAATCAACACCCTCTCGACATTCATCAAAATCTTGATAGCCCAGATGGTAACTGTTCTGGAGGTAGTATAGATGCCGGCGGTAACAGGAGCAGCACCAACAACTCAGACAATTCTCATGAGGTTAAGCCCCCCTCCCGGGATGCCCCAACTTCTGGCGATTATGCTTTCCAGTTAAATTCGCATTCCATTTCTCGGAAGCCCTTTCAACCTCCAAGTGCTTCCACAAATATCGGTGATGGACTGTTGGATTGGGATTCCTCTATTTCTAAGCTATTGGCTCAAAATATGTTTAGTGATGCAGAATCCGTCTCACAGTTTAAGAGGGGGTTAGAGGAAGCTAGCAAGTTTCTGCCTAGAGGAACTCAACTTGTCACTGGTCTGGAGAGCAACTCGGTGTTTCCAGAGTCAAAGAGAGAGGCAGATAAGGCAGTATTCAATATAGCAGAAGATGCTCGGGAGAATTCGCATGGATTAAAGGGTAGGAAGAATCATGAGCGTGAAACTGGTAATACAGAAGAAGGGAGAAGTAACAAGCAGACGGCAGTCTATGTTGACGAGAGTGATATATCAGAAATGTTTGATCGAGTCTTACTTAGTGTTGAGAATGTTCCACTATGTGATGAACACAAAGGTTTGCAGAATGGAACAGTCAAAGCCATGGAGCCAAGTGAAAAGCCACGTTCATCTAATGGGGGGAAGAGTCACTCTAAGAAACAAGGCAGGAAAAAGGAAACCGTGGATTTGAGGAGTCTCCTGGTTCTATGTTCACAAGCTGTGTCTGCTAATGACAGCAGGACTGCTAATGAACTACTAAAGCAGATTAGGCAGCATTCTTCCCCCCTAGGAGATGCATCACAGAGGTTGGCTCATTACTTCGCCAATGGCCTTGAGGTACGCTTGGTCGGTGCTGGTACTGGAACCCAATTATTTTATTCCTCTCTGAACTCCAAGAGGATTTCTGCTGCTGATATCTTGAAAGCTTACAGGACTCTGATATCTGTTTGCCCTTTCAAGAAGTTTGCATATTTTTTTGCAAACAAAACGATAATGAAAGCAGCTGAAAAGGCAAAATCCCTTCATATTATCGATTTTGGGATTCAATATGGTTTCCAGTGGCCAATACTTATCAAGTTTCTTTCGAAAAGAGCTGGTGGGCCTCCAAAGCTACGCATCACGGGGATAGAAATTCCCCAAGCTGGCTTTCGCCCAGCTGAAAGAATTGAGGAGACTGGTCGACGTCTAGCTAATTATTGCACACGCTTTGATGTTCCTTTTGAGTACAAAGCCATAGCATCACAACACTGGGAAACCATCCGAATGGAAGACCTTGAGATTGGGGGCGATGAACTTCTTGCTGTTAACTGTTTGATGAGATTTAAGAATTTACTCGACGAGACAATTGAAGTTAACAGTCCTAGAAATGCAGTTCTGAAATTAGTCAGGAAGATGAATCCAGATATTTTTGTTCAATCCATTGTTAATGGGTCCTACAATGCCCCTTTCTTTGCCACGCGGTTCAGGGAGGCGATGTTCCATTTTTCTGCAATGTTTGATATCCTGGACACTCTCATACCCCGTGAAAATGAATGGAGGTTGATGAGTGAGAGAGAGTTTCTGGGTCGGGAAGCCATGAATGTTCTAGCTTGTGAAGGCATCGAGAGGGTTGAGAGGCCTGAGACATACAAACAATGGCAGGTTAGGAATACAAGAGCTGGTTTCAGGCAGCTCCCGCTGAATAAGGAGATAATGGCCAAATTTAGGGGAATGTTCAAGGAATGGTATCACAGAGATTTTGTAATTGATGAAGACAACAACTGGATGCTTCAGGGCTGGAAGGGCCGCATTTTGTTTGCTTCCACATGTTGGGTGCCAGCATAA 2346 0.442 MDPNFDGSHGYINGYKLDDGTVVSDPNHFLYLANDWEFNEQYRNLLNFTGDPFYQPDAVPLSFAPHPSVNFVGEQSVSTWTGDPAEDVSDVSAAASTSLADPSGDADFSETIKYISQILMEENFERKPSMFFDPLNLQVTEKSFYDALKEKYPLSPNQHPLDIHQNLDSPDGNCSGGSIDAGGNRSSTNNSDNSHEVKPPSRDAPTSGDYAFQLNSHSISRKPFQPPSASTNIGDGLLDWDSSISKLLAQNMFSDAESVSQFKRGLEEASKFLPRGTQLVTGLESNSVFPESKREADKAVFNIAEDARENSHGLKGRKNHERETGNTEEGRSNKQTAVYVDESDISEMFDRVLLSVENVPLCDEHKGLQNGTVKAMEPSEKPRSSNGGKSHSKKQGRKKETVDLRSLLVLCSQAVSANDSRTANELLKQIRQHSSPLGDASQRLAHYFANGLEVRLVGAGTGTQLFYSSLNSKRISAADILKAYRTLISVCPFKKFAYFFANKTIMKAAEKAKSLHIIDFGIQYGFQWPILIKFLSKRAGGPPKLRITGIEIPQAGFRPAERIEETGRRLANYCTRFDVPFEYKAIASQHWETIRMEDLEIGGDELLAVNCLMRFKNLLDETIEVNSPRNAVLKLVRKMNPDIFVQSIVNGSYNAPFFATRFREAMFHFSAMFDILDTLIPRENEWRLMSEREFLGREAMNVLACEGIERVERPETYKQWQVRNTRAGFRQLPLNKEIMAKFRGMFKEWYHRDFVIDEDNNWMLQGWKGRILFASTCWVPA 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0178 781 MobiDBLite consensus disorder prediction 307 338 - -
Glsi04g0178 781 MobiDBLite consensus disorder prediction 367 399 - -
Glsi04g0178 781 Pfam GRAS domain family 404 778 IPR005202 -
Glsi04g0178 781 MobiDBLite consensus disorder prediction 307 329 - -
Glsi04g0178 781 MobiDBLite consensus disorder prediction 159 195 - -
Glsi04g0178 781 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 343 773 IPR005202 -
Glsi04g0178 781 MobiDBLite consensus disorder prediction 156 211 - -
Glsi04g0178 781 ProSiteProfiles GRAS family profile. 395 779 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0178 Glsi-ChrGlsi04 1201649 1203994 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0178 111 781 GRAS Transcription Factor Family AT1G07530 52.237 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Glsi04g0178 GRAS 1.9e-113 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0178 04 1201649 1203994 Glsi14g1846 14 18690575 18692923 CCT
Glsi04g0178 04 1201649 1203994 Glsi04g0178 04 1201649 1203994 ECH