Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0167 ATGAGTTTCGTTTTCCGTGGGAGTAGAGGAGATATCGAAAGTGGGTTTTCTGAATATGTTCCCGAAAGAACACCATTGCTGAGATTATACAAAACTACACATAGATCACTTAACTATAGTTCTTATGCTGCTGCGTTTTCTTCTCCTTTTTTCCATCAGCGTGTTCATCCAGCTCGGCCAGTAAATAGCAATTCTCTGGCTTTTCTTATTACAGTTATCTTGCTTTTCATGATATTGAATTCTCCTCAGATGTCACATTATTTTTTGCTCTGGCTTGTGCTGGCTGTCTTTGTGATGGCTACAAGCCTGAGGATGTATGCAACTTGTCAGCAACTTCAAGCTCAAGCAAGGGCTCAAGCTGCTGCAGCCACGGGGTTGCTTGGCCATACTGAATTACGAGTTCACGTTCCACCATCAATAGCAATTGCAACTAGGGGACGGTTGCAAGGACTAAGACTTCAGCTTGCACTTCTTGATCGTGAATTTGATGAGCTAGATTATGACACTTTGAGGGCTCTGGACTCTGACACTGCTTCTAGTACTTCTTCAATGACTGAGGAAGAGATAAATGCTTTGCCTGTTCACACTTATAAAGTTCCAGTACCAACGAAGGATGGCTCAGCTGGCTCGGCATCCTCTTCACATGCAAGCGAGATTAAACAAGACTCTGGAGGAACAGAGGGAAATATCAAGGGCCCAGAAGATGAGCTGACATGTACCATATGCTTGGAGCAAGTTAAAACGGGGGAGCTTGTTCGTAGCATGCCATGTTTGCATCAGTTTCATGCCAACTGCATCGATCCATGGCTCCGGCAACAAGGAACATGCCCTGTGTGTAAATTAAGGTTGAGGATGGGGTCGGGCTGGCAGGGAAACAGAGGGAGTGAGTCTGAAGCTTCGGATATTGTGTAG 912 0.4518 MSFVFRGSRGDIESGFSEYVPERTPLLRLYKTTHRSLNYSSYAAAFSSPFFHQRVHPARPVNSNSLAFLITVILLFMILNSPQMSHYFLLWLVLAVFVMATSLRMYATCQQLQAQARAQAAAATGLLGHTELRVHVPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTASSTSSMTEEEINALPVHTYKVPVPTKDGSAGSASSSHASEIKQDSGGTEGNIKGPEDELTCTICLEQVKTGELVRSMPCLHQFHANCIDPWLRQQGTCPVCKLRLRMGSGWQGNRGSESEASDIV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0167 303 Pfam Ring finger domain 238 280 IPR001841 -
Glsi04g0167 303 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Glsi04g0167 303 SUPERFAMILY RING/U-box 234 288 - -
Glsi04g0167 303 PANTHER TARGET OF ERK KINASE MPK-1 39 283 - -
Glsi04g0167 303 MobiDBLite consensus disorder prediction 200 231 - -
Glsi04g0167 303 SMART ring_2 239 279 IPR001841 -
Glsi04g0167 303 MobiDBLite consensus disorder prediction 206 224 - -
Glsi04g0167 303 CDD RING-H2_PA-TM-RING 238 280 - -
Glsi04g0167 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 285 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0167 Glsi-ChrGlsi04 1157715 1160235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0167 1 303 C3H Transcription Factor Family AT3G55530 65.246 1.21e-123 353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0167 04 1157715 1160235 Glsi04g0167 04 1157715 1160235 ECH