Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0165 ATGGCAAACGTATATGCTGCGTTCATGGCGAGAAATTTCCCTGTATTTTCCGGGCTTGCAGCGGAAACGCGTGGGCCCTATCCACTTTCTTTTATCTCTCCCGTTCCTCGGTCCCTTAAATTCACGCTCCCCCTCCGGCTCCTCTTAGCAGATTCATACTTGCGCTTTCTTTCGGCGCCACCCGGTCAACTCCTTCTTTCCCAAGTTTGGATCTTGAAGACATTGCTAATGAATTCGGATATGGCTTCCTATTGGTGCTATAGCTGCACTCGCTTTGTTCGCCTCTTGGGTCAAGACCTCATCGCTTGTCCTCACTGCCAAAGTGGCTTCGTTGAAGAGATCCACACCAACCCATCTTCCGATCATCCTCATCACAGCCCATTTCCACCTTCTGCCATGTCTATGCTCGCCGATGGAGGCGCTCCAAGTTCCTACGACTTCAGCAGACAAGGGTTCCGGCGAAGACGCCGTAACGCCGGAAGCCGATCTCCCTTCAACCCTGTAATAGTTCTTCGTGGACCCGCCGACGCTGCTGGAGGAGACAGCGGTGGTGATCAGGAGGAAAGTAGCTTCGAATTGTATTACGATGACGGAGACGGCTCCGGTCTCCGACCATTGCCTCCGACCATGTCTGAGTTTTTGTTAGGATCAGGTTTCGATCGGCTACTGGAGCAGTTTTCGCAGATCGACATGAATGGGTTTGGGCGGCCGGAGAACCCGCCAGCTTCTAAAGCGGCCATAGAATCAATGCCCACGATTGAGATTGCGGAGACACACGTGGACACCGATGCACACTGTGCCGTGTGCAAAGAAGCGTTTGAGCTGGGTTCGGAGGCTCGTGAAATGCCCTGCAAGCACATATACCATTCGGACTGCATCCTCCCGTGGCTTTCAATGCGCAATTCGTGCCCTGTGTGCCGCCACGAGTTGCCTTCGGATAGAAACCCGTTGGAAAGTAGAATATCAGGGCAAATCGATGAAGAAACAGTAGGATTAACGATATGGAGGCTTCCAGGTGGGGGCTTTGCTGTGGGAAGGTTTTCTGGCGGCCGCAGAGCTGGTGAGACTCATCTGCCTATTGTATACACAGAAATGGATGGTGGAATAAATACAAATGGAGCTACTAGAACAATTTCCCGGACAGTAAGAAGCACCAGAGTTAGAGAAAGTCGTGGATTTGGCAGAGTTTTTCGCAATTTCTTCTCATTCTTTGGGAGGCTTCGGTCTAGGTCAACTTCATCTTCGTCTTCGTCATCATATGCTAGTTCCGAACATGAGTCCATGAGTATGAGCCGGAGCCATTGGAGCTCAGTATTAAGTAGGAACTCGAGAAGGCGCAGCAGAAGTTGGGTTTTGGAAGATTGA 1365 0.5121 MANVYAAFMARNFPVFSGLAAETRGPYPLSFISPVPRSLKFTLPLRLLLADSYLRFLSAPPGQLLLSQVWILKTLLMNSDMASYWCYSCTRFVRLLGQDLIACPHCQSGFVEEIHTNPSSDHPHHSPFPPSAMSMLADGGAPSSYDFSRQGFRRRRRNAGSRSPFNPVIVLRGPADAAGGDSGGDQEESSFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIDMNGFGRPENPPASKAAIESMPTIEIAETHVDTDAHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLSMRNSCPVCRHELPSDRNPLESRISGQIDEETVGLTIWRLPGGGFAVGRFSGGRRAGETHLPIVYTEMDGGINTNGATRTISRTVRSTRVRESRGFGRVFRNFFSFFGRLRSRSTSSSSSSSYASSEHESMSMSRSHWSSVLSRNSRRRSRSWVLED 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0165 454 SUPERFAMILY RING/U-box 246 314 - -
Glsi04g0165 454 Pfam Ring finger domain 265 307 IPR001841 -
Glsi04g0165 454 CDD RING-H2_RNF126-like 266 307 - -
Glsi04g0165 454 ProSiteProfiles Zinc finger RING-type profile. 266 307 IPR001841 -
Glsi04g0165 454 SMART ring_2 266 306 IPR001841 -
Glsi04g0165 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 313 IPR013083 -
Glsi04g0165 454 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 146 311 - -
Glsi04g0165 454 Pfam zinc-ribbon 83 114 IPR039525 GO:0061630
Glsi04g0165 454 MobiDBLite consensus disorder prediction 153 197 - -
Glsi04g0165 454 MobiDBLite consensus disorder prediction 409 445 - -
Glsi04g0165 454 Pfam Protein of unknown function (DUF1117) 330 444 IPR010543 -
Glsi04g0165 454 MobiDBLite consensus disorder prediction 409 454 - -
Glsi04g0165 454 FunFam E3 ubiquitin-protein ligase RING1-like 228 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0165 Glsi-ChrGlsi04 1152097 1155122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0165 205 318 C3H Transcription Factor Family AT5G01980 45.614 4.05e-28 114