Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0162 ATGGGGGAGGAGGTGAAGATTATCGAATACGAAGGCGGTGCTCCGGACGATGACGAACGGGTCCTCGAATGGGAGTTGGGTCTCCCTACTACCCATGATCTCCCTCCTCTCTCTCAGCTCTTGATCCCGCCAGAGCTCGCCTCTGCCTTTAGCATCTCGCAGGAGCCCTATCGGACACTCCTCGACGTTAATCGTGCATCGCAGGATACTCTTTCCGGTCTGCGGGGCGGAAGTTCTCAGGCCTTTTCGTCCAACAATTTCAAGTCTTTCAACGATGACCGGAGTCGGGACCCCATGGTGGTGGAAGCAGATGAAGAGGCTGATCGAGAAGGGTCGGGCTCCGAGTCTAGGAAACTCAGGAAGATCGATTGCGCAGAAGAAGCTGATTCGGTTTTGCGGACTGAGAATTCGACTGATGATCCGTCTGCTCGGACCTTGAGGCGGCCTCGGCTGGTATGGACTCCGCAGTTACACAAGCGGTTTGTGGATGTGGTGGCTCATCTGGGAATCAAGAACGCGGTGCCGAAGACAATTATGCAGTTGATGAATGTTGAGGGATTGACCCGAGAAAATGTGGCCAGCCATCTGCAAAAGTATCGGCTTTACTTGAAGAGGATGCAGGGTCTGTCCAACGAGGGTCCTTCATCGTCGGACCAGCTCTTCGCATCCACACCTGTGCCGCAGAGCTTACACGAGTCTGGAGGAAGTGGGCATTCTCATGGAAATGGGCATATGTCGGTCCCGATTCCGATGCCATATCCACGGCCTATGATGCCCATGCCGGTTCTTGGGATGCCGCACGCACATGCTCACATGGGAATGCCGGTGGGTAATCCCGGTTATCATCATGGCTTCGAGTCCAATCCATATAACATGTCTGCCAACAAATATGGTTCGGTTGTATCATACCCTCACATTACCACTAATAATAAATGA 936 0.5321 MGEEVKIIEYEGGAPDDDERVLEWELGLPTTHDLPPLSQLLIPPELASAFSISQEPYRTLLDVNRASQDTLSGLRGGSSQAFSSNNFKSFNDDRSRDPMVVEADEEADREGSGSESRKLRKIDCAEEADSVLRTENSTDDPSARTLRRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHESGGSGHSHGNGHMSVPIPMPYPRPMMPMPVLGMPHAHAHMGMPVGNPGYHHGFESNPYNMSANKYGSVVSYPHITTNNK 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0162 311 Gene3D - 145 207 - -
Glsi04g0162 311 FunFam Two-component response regulator 144 207 - -
Glsi04g0162 311 SUPERFAMILY Homeodomain-like 145 205 IPR009057 -
Glsi04g0162 311 NCBIfam myb-like DNA-binding domain, SHAQKYF class 149 201 IPR006447 GO:0003677
Glsi04g0162 311 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 15 277 IPR044841 GO:0003700|GO:0006355
Glsi04g0162 311 MobiDBLite consensus disorder prediction 209 240 - -
Glsi04g0162 311 MobiDBLite consensus disorder prediction 209 246 - -
Glsi04g0162 311 MobiDBLite consensus disorder prediction 71 89 - -
Glsi04g0162 311 MobiDBLite consensus disorder prediction 71 120 - -
Glsi04g0162 311 Pfam Myb-like DNA-binding domain 152 200 IPR001005 -
Glsi04g0162 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 204 IPR017930 -
Glsi04g0162 311 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0162 Glsi-ChrGlsi04 1135919 1136854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0162 1 283 G2-like Transcription Factor Family AT3G46640 56.066 3.37e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi04g0162 Myb_DNA-binding 1.2e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0162 04 1135919 1136854 Glsi04g0162 04 1135919 1136854 ECH