Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0155 ATGGAGTCTGATGATCAGCCATTAACATCAGAAAAGCCCAACGATGAACAAGGTGGAAGTCAAGTGAGGTCCTACGAGTGCACCTTCTGCAAGAGGGGCTTCTCTAATGCACAAGCATTGGGAGGCCACATGAACATCCACAGGAAAGACAAAGCCAAGCTCAAGCAATCCTCGAACGAACCTTGGACCATTCCCAAAGTATCTGCTTCGCTTGGGACCATGGAAGCCAAGCCTGGTGAAGACAGAAGCAACCCAAACTGGCCTTGGAATATCGACGATGCCTCCTCACGGGATGAAACCCACGTTGTTCACATAAGGCAGCTCCCACTATTCGCCGAAACACCTGCGGGGGAAACTCAAAACCCAGAATTAGGACCAAGTCATTGGGAAATTGATGCGGAAAAAGCTTTGCCATCTGGCCAAGGTTCGTCATCGGATTTAGACCTTGAACTAAGACTAGGGCCTGACCCCCAGGATCCCTCTGCCACTATGGCTACCAGAAAATTCTTTTGA 513 0.4971 MESDDQPLTSEKPNDEQGGSQVRSYECTFCKRGFSNAQALGGHMNIHRKDKAKLKQSSNEPWTIPKVSASLGTMEAKPGEDRSNPNWPWNIDDASSRDETHVVHIRQLPLFAETPAGETQNPELGPSHWEIDAEKALPSGQGSSSDLDLELRLGPDPQDPSATMATRKFF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0155 170 SMART c2h2final6 25 47 IPR013087 -
Glsi04g0155 170 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Glsi04g0155 170 Pfam C2H2-type zinc finger 25 49 - -
Glsi04g0155 170 Gene3D Classic Zinc Finger 9 77 - -
Glsi04g0155 170 MobiDBLite consensus disorder prediction 1 22 - -
Glsi04g0155 170 PANTHER OS07G0101800 PROTEIN 4 156 - -
Glsi04g0155 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
Glsi04g0155 170 MobiDBLite consensus disorder prediction 51 94 - -
Glsi04g0155 170 SUPERFAMILY beta-beta-alpha zinc fingers 23 52 IPR036236 -
Glsi04g0155 170 MobiDBLite consensus disorder prediction 114 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0155 Glsi-ChrGlsi04 1106947 1107459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0155 19 166 C2H2 Transcription Factor Family AT3G53820 37.908 1.62e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g0155 zf-C2H2_6 9.5e-06 CL0361