Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0152 ATGAAAATTGATTTTGATGATAATTTTGTATTAGCCACCTTGTTGGTCGAACATTTATATCAGAAACACATTTTTCTTAATCTTCGGGAAGCTACCGCAACAGCTAGCAGCGATGCCGGAGTGGCTGCTGCAGTGGTGAGTGCAGCTCATATGACTGCTATGAGTGCCGATGCAGATGGTAGTAGTCATGGCCATGGGGGTGAATCTGCTGGTTCTGGTGATGGTGATGGCGGGGGTGGTGAAGAAAAGGGTCCCCAATCTTTCAGAGACAAGAGAAAAATTGAAACTATCATTGGTGGGGTGCGCCAGGAAGCCCTAGCCCCCATCTCTGTGTCTCTTTCACTCGCAGTTTACACAGGCATGGCGTTATCCAAAACGGTTGGTCCAGTTCCGGCGACCCAAAACCCTTCTCAACCGGCGAAGATACGATGGGGTGAGCTGGATGAGGATGACGGTGAGGATCTCGACTTTTTGCTGCCGCCGCGACAGGTGATAGGCCCCGACGAGAACGGCATAAAGAAGGTGATTGAGTATAAATTTAACGAAGATGGCAATAAGGTGAAGATCACTACCATCACTCGTACTCGTAAGCTTGCTAACGCTCGCCTTAGTAAGCGGGCCGTTGAGAGGCGATCCTGGGCTAAGTTCGGTGATGCTGTTCACGAGGATGTTGGTAGCAGGCTCACCATGGTGTCCACCGAAGAGATCCTCCTCGAGCGACCTAGGGCTCCGGGTAGCAAACCAGAAGAACCAAAGGTTGCTGGAGACCCATTGGCTCAATTCCAAAAAGGTGCTGTTCTCATGGTCTGTAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCATACAAGGATCTTGCGCAACCAGTGGAGGCATTTATCGATAAACCTCCTGCATCAGAAGCTGCAACTGCTGCTGCTGGTGGTCCGACTAAGGGAGCATATGTCCCTCCTGGTCTTAGAGCAGGTGCAGAGAGGACTGGATCAGACATGCGGCGAAGGAATGATGAAAATTCTGTACGTGTCACCAACCTGTCAGAGGATACAAGAGAGCCTGACTTGCATGAACTGTTCCGTCCTTTTGGTGCTGTAAGCAGAGTCTATGTTGCTGTTGATCAAAAGACTGGCATGAGCAGAGGATTTGGCTTTGTTAACTTTGTAAACAGGGAAGATGCTCAGAGAGCTATTAATAAACTCAATGGATATGGTTATGACAATCTCATCCTTAGAGTTGAATGGGCCACCCCAAGGACGAACTAA 1269 0.4925 MKIDFDDNFVLATLLVEHLYQKHIFLNLREATATASSDAGVAAAVVSAAHMTAMSADADGSSHGHGGESAGSGDGDGGGGEEKGPQSFRDKRKIETIIGGVRQEALAPISVSLSLAVYTGMALSKTVGPVPATQNPSQPAKIRWGELDEDDGEDLDFLLPPRQVIGPDENGIKKVIEYKFNEDGNKVKITTITRTRKLANARLSKRAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPVEAFIDKPPASEAATAAAGGPTKGAYVPPGLRAGAERTGSDMRRRNDENSVRVTNLSEDTREPDLHELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRTN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0152 422 Pfam Eukaryotic translation initiation factor 3 subunit G 163 289 IPR024675 -
Glsi04g0152 422 SUPERFAMILY RNA-binding domain, RBD 339 421 IPR035979 GO:0003676
Glsi04g0152 422 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 141 421 IPR017334 GO:0003743|GO:0005737|GO:0005852
Glsi04g0152 422 Gene3D - 319 422 IPR012677 -
Glsi04g0152 422 MobiDBLite consensus disorder prediction 304 340 - -
Glsi04g0152 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 343 409 IPR000504 GO:0003723
Glsi04g0152 422 MobiDBLite consensus disorder prediction 56 90 - -
Glsi04g0152 422 CDD eIF3G 170 288 IPR024675 -
Glsi04g0152 422 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 147 418 - -
Glsi04g0152 422 CDD RRM_eIF3G_like 342 417 IPR034240 -
Glsi04g0152 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 341 419 IPR000504 GO:0003723
Glsi04g0152 422 SMART rrm1_1 342 415 IPR000504 GO:0003723
Glsi04g0152 422 FunFam Eukaryotic translation initiation factor 3 subunit G 306 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0152 Glsi-ChrGlsi04 1090882 1096779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0152 140 420 Eukaryotic Initiation Factors Gene Family AT3G11400 70.833 1.08e-155 441