Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0150 ATGGCACAACAAGGGCAGGGTGAGGGGACCATCGACCCTGCCGTTCTGGATGACATTATCAACCGCTTACTGGAGTTTCGACACGCTAGGCCTGGTAAACAGGTCCAGCTCATGGAGACCGAGATCCGTCAGCTTTGCACTGTTTCCAGAGAAATCTTCCTCCAACAACCTAACCTCCTTGACCTTGAGGCACCCATCAAGATCTGTGGTGACATCCATGGACAATATTCTGATCTGCTGAGGCTTTTTGAGTATGGGGGTTTTCCTCCACATTCTAACTATTTATTCCTGGGAGACTATGTTGACCGGGGGAAGCAGAGTTTGGAAACGATATGCCTTTTGCTTGCCTACAAGATCAAATACCCAGAGAACTTCTTTCTTCTAAGAGGAAATCATGAATGTGCTTCAATTAATCGGATATACGGATTTTATGATGAATGCAAACGTCGTTTCAATGTGAGGCTGTGGAAGACTTTCACTGATTGTTTTAATTATCTTCCTGTTGCTGCTGTCATAGATGACAAAATATTATGCATGCATGGAGGCCTTTCTCCTGATTTAACAAATTTAGATCAAATTAGAAACCTACCTCGTCCAACTGATGTTCCAGATTCTGGTTTGCTGTGCGATTTACTTTGGTCAGACCCTGGTAGAGATATCAGAGGCTGGGGAATGAATGATCGTGGAGTTTCATACACCTTTGGTGCAGATAAGGTGTCTGAATTTTTAATGAAAAATGATATGGATCTTGTTTGCCGTGCTCATCAGGTCGTTGAGGATGGATACGAATTCTTTGCTGACCGGCAGCTTGTCACTATATTCTCTGCTCCAAATTATTGTGGTGAATTTGATAATTCTGGTGCTATGATGAGCGTTGATGAAAGCTTAATGTGCTCTTTCCAGATTCTTAAGCCTGCAGATAAAAGACTTAGATTCATTTGA 942 0.4268 MAQQGQGEGTIDPAVLDDIINRLLEFRHARPGKQVQLMETEIRQLCTVSREIFLQQPNLLDLEAPIKICGDIHGQYSDLLRLFEYGGFPPHSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNYLPVAAVIDDKILCMHGGLSPDLTNLDQIRNLPRPTDVPDSGLLCDLLWSDPGRDIRGWGMNDRGVSYTFGADKVSEFLMKNDMDLVCRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNSGAMMSVDESLMCSFQILKPADKRLRFI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0150 313 SUPERFAMILY Metallo-dependent phosphatases 23 310 IPR029052 -
Glsi04g0150 313 PRINTS Serine/threonine phosphatase family signature 161 187 IPR006186 GO:0016787
Glsi04g0150 313 PRINTS Serine/threonine phosphatase family signature 65 92 IPR006186 GO:0016787
Glsi04g0150 313 PRINTS Serine/threonine phosphatase family signature 269 285 IPR006186 GO:0016787
Glsi04g0150 313 PRINTS Serine/threonine phosphatase family signature 247 267 IPR006186 GO:0016787
Glsi04g0150 313 PRINTS Serine/threonine phosphatase family signature 190 217 IPR006186 GO:0016787
Glsi04g0150 313 PRINTS Serine/threonine phosphatase family signature 127 151 IPR006186 GO:0016787
Glsi04g0150 313 PRINTS Serine/threonine phosphatase family signature 94 121 IPR006186 GO:0016787
Glsi04g0150 313 Gene3D - 10 313 IPR029052 -
Glsi04g0150 313 SMART pp2a_7 37 307 IPR006186 GO:0016787
Glsi04g0150 313 Pfam Serine-threonine protein phosphatase N-terminal domain 16 63 IPR031675 -
Glsi04g0150 313 ProSitePatterns Serine/threonine specific protein phosphatases signature. 128 133 IPR006186 GO:0016787
Glsi04g0150 313 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 19 307 - -
Glsi04g0150 313 CDD MPP_PP1_PPKL 15 305 - -
Glsi04g0150 313 FunFam Serine/threonine-protein phosphatase 63 313 - -
Glsi04g0150 313 Pfam Calcineurin-like phosphoesterase 65 257 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0150 Glsi-ChrGlsi04 1078860 1081300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0150 60 253 Calmodulin-binding Proteins AT5G63870 31.878 5.10e-27 105