Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0139 ATGGGAGCTCGTTGCTCTAAATTCTCACTATGCTGGTGGTCGTCTAATATCAAATCAAATCTTCATGACTTGTCTGATAATGATGATGGAAACAAGAATGAGAAGCCCGCCTTCACTGAGTACAGCTTGGATCAACTAAGAACTGCCACTTCAGGATTTTCACCCGACAACATTGTCTCAGAGCACGGTGAGAAAGCTCCAAATGTTGTATATAAAGGAAAGCTTGAAGATGACAGGTGGGTTGCCGTGAAGCGCTTCAACAAGTCGGCCTGGCCTGATTCTCGGCAATTCCTAGAGGAAGCACGAGCAGTGGGGCAGCTGTGGAATGAGCGATTGGCTAACTTGATGGGGTGTTGTTGCGAAGGAGAAGAGAGACTGCTTGTTGCTGAGTTTATGCCCAATGAAACTCTCTCGAAACATCTTTTTCATTGGGAAACCCAGCCCATGAAATGGGCAATGAGGCTGAGAGTGGCCTTTTATTTAGCACAAGCATTGGAATACTGCAGCAGTAGAGGAAGGGCATTATACCATGATCTTAATGCTTACAGAATTTTGTTTGATCAGGATGGAAATCCTAGACTCTCTTGTTTTGGACTCATGAAGAACAGCAGAGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACCCCTCCAGAGTACTTGCGGACAGGAAGAATCACTCCAGAAAGTGTAATTTACAGTTTCGGTACCCTTTTGCTTGATCTTCTCAGTGGCAAGCATATCCCACCTAGTCATGCACTAGATCTTATAAGAGGCAAAAATTTCTTGATGCTCATGGACTCATGTTTGGAAGGCCATTTTTCTAATGATGATGGAACTGAATTAGTGCGATTAGCTTCACGTTGTTTACAGTATGAACCTCGTGAGAGGCCAAATGCTAAGTCACTTGTGAATGCGTTAACCCCTCTTCAGAAAGAAACTTCAGTACCATCATGTATTTTGATGGGCATACCAGATGGGAGGACATCATCAAAGGAAGTGGTTTCGTTGACACCTTTTGGTGAAGCTTGTTCTAGAAGAGACTTCACTGCAATACATGAAATTTTGGAAAAGGTGGGGTACAAGGATGATGAAGATGTTGCAAATGAGCTTTCCTTCCAAATGTGGACAGACCAAATACAAGAAACACTAAATTCTAAGAAGCAGGGAGATTCTGCTTTTCGTGCTAAAGACTTCTCTGCAGCCGTTGACTGCTATACACAATTCATAGATGGTGGGACCATGGTATCACCAACTGTGTACGCCAGGCGCTGCTTATGTTACTTGATGAACGACATGCCACAAGAAGCTCTTGGAGATGCCATGCAAGCCCAATCAGTGTCTCCCACCTGGCCCACTGCATTCTATCTTCAAGCAGCTGCCCTCTTCACCCTTGGGATGGACAATGATGCTCAGGAAAGTCTTAAAGACGGCACAACACTGGAAATCAGAAAGCAAAGATATTGA 1467 0.441 MGARCSKFSLCWWSSNIKSNLHDLSDNDDGNKNEKPAFTEYSLDQLRTATSGFSPDNIVSEHGEKAPNVVYKGKLEDDRWVAVKRFNKSAWPDSRQFLEEARAVGQLWNERLANLMGCCCEGEERLLVAEFMPNETLSKHLFHWETQPMKWAMRLRVAFYLAQALEYCSSRGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNAKSLVNALTPLQKETSVPSCILMGIPDGRTSSKEVVSLTPFGEACSRRDFTAIHEILEKVGYKDDEDVANELSFQMWTDQIQETLNSKKQGDSAFRAKDFSAAVDCYTQFIDGGTMVSPTVYARRCLCYLMNDMPQEALGDAMQAQSVSPTWPTAFYLQAAALFTLGMDNDAQESLKDGTTLEIRKQRY 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0139 488 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 21 487 IPR045845 GO:0004672|GO:0009742
Glsi04g0139 488 SUPERFAMILY Protein kinase-like (PK-like) 33 313 IPR011009 -
Glsi04g0139 488 FunFam probable serine/threonine-protein kinase At4g35230 28 131 - -
Glsi04g0139 488 FunFam probable serine/threonine-protein kinase At4g35230 381 488 - -
Glsi04g0139 488 FunFam probable serine/threonine-protein kinase At5g41260 133 324 - -
Glsi04g0139 488 Gene3D Transferase(Phosphotransferase) domain 1 133 324 - -
Glsi04g0139 488 Gene3D Phosphorylase Kinase; domain 1 27 131 - -
Glsi04g0139 488 Gene3D Tetratricopeptide repeat domain 381 488 IPR011990 GO:0005515
Glsi04g0139 488 SUPERFAMILY TPR-like 385 484 IPR011990 GO:0005515
Glsi04g0139 488 Pfam Protein tyrosine and serine/threonine kinase 69 307 IPR001245 GO:0004672|GO:0006468
Glsi04g0139 488 ProSiteProfiles Protein kinase domain profile. 56 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0139 Glsi-ChrGlsi04 1033610 1037525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0139 20 307 Glycoside Hydrolase AT3G07070 32.278 4.88e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Glsi04g0139 PK_Tyr_Ser-Thr 9.1e-27 CL0016