Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0133 ATGAGGAAGCCCGAGTCTGGAAAAAACAACTCCAACAACAAACTTAGGAAGGGGTTGTGGTCACCAGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAATGGACAAGGTTGTTGGAGTGATGTGGCCAGAAATGCGGGTTTGCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGCGCCTTCTCTCCCCAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGGCAACAGATGGTCCCAAATAGCGGCGCGCTTACCTGGGCGAACCGACAATGAAATCAAGAACTTTTGGAATTCAACAATAAAGAAAAGGCTCAAGAACTTGTCGTCTACAACCACAAACTCACAAAACGCAAGCGAGGCTTCATCTGAGCCTAAGGAGCTCAACATGGGAGGTTTTATTTCTAGGCAAGATCAGCATGGGTTTACGCCTATGTTCAATTCATCTCCATTACCATCAATGCAAACCACAGTTCTCAATAACATAATTGACAAGTTGCCTATGTTCGAGCATGGACTAAACATGCCAGCTTCTGGCGGATTTTTCAACAGTGCAGGGCCATGCTTCACACAAAATGGTTTTTATTTCGAAAATGGAGTGTTCGGGAGTGTAAATATTGGGGCAGAAGGGGAGTTGTTTGTTCCTCCTCTAGAGAGCGTTAGCAATACTACAGATAACGTGAAAGTCGAGAGAGACACTAACAATAGTTACTTTGATAACACAAACAGCATCCTTAACAACTGCAATAGCAACAATAACAGAGTTGAAAGTAGAGGTGGGGTGGAGAATTTATTTCAAGAAGAGTTAACTATGGGAGAGTGGGACTTGGAGGACTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAGCTGA 924 0.4318 MRKPESGKNNSNNKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTTTNSQNASEASSEPKELNMGGFISRQDQHGFTPMFNSSPLPSMQTTVLNNIIDKLPMFEHGLNMPASGGFFNSAGPCFTQNGFYFENGVFGSVNIGAEGELFVPPLESVSNTTDNVKVERDTNNSYFDNTNSILNNCNSNNNRVESRGGVENLFQEELTMGEWDLEDLMKDVSSFPFLDFSS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0133 307 CDD SANT 72 112 IPR001005 -
Glsi04g0133 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Glsi04g0133 307 FunFam MYB transcription factor 14 70 - -
Glsi04g0133 307 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Glsi04g0133 307 MobiDBLite consensus disorder prediction 122 138 - -
Glsi04g0133 307 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Glsi04g0133 307 PANTHER MYB DOMAIN PROTEIN 55 10 293 - -
Glsi04g0133 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Glsi04g0133 307 SMART sant 69 117 IPR001005 -
Glsi04g0133 307 SMART sant 16 66 IPR001005 -
Glsi04g0133 307 FunFam Transcription factor MYB46 71 142 - -
Glsi04g0133 307 MobiDBLite consensus disorder prediction 122 142 - -
Glsi04g0133 307 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Glsi04g0133 307 CDD SANT 20 64 IPR001005 -
Glsi04g0133 307 Gene3D - 71 143 - -
Glsi04g0133 307 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Glsi04g0133 307 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Glsi04g0133 307 Gene3D - 14 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0133 Glsi-ChrGlsi04 992628 994281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0133 1 302 MYB Transcription Factor Family AT5G12870 47.826 2.37e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0133 Myb_DNA-binding 3.5e-12 CL0123