Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0131 ATGAGTTGGAACCCACACATGGAGGTCCATTACAATAACATCAGCTATCCGTATAGTACAGCAGGAAGCTTTATTGAATATTTTGAAGGTCTAACCTACGAACATGTCAATTTCATTTTTTCTGGTGCTTCGCATACTCAGGAGAGTTTGTACCCATCAAATACAGGTTTTTACAAGTTTGGACCATCTGAACCTGAGAGTACTTCATACTATCGATACAGTCATGGTTATGAGGTTAATCGTCACGAACCACGGATGGATGAGCGTAGAAGGCCTTCAGAGAACTCATCAGCATTTAATGAACAGACGGCAGCAGTAAGTACAGAATGGGGTGAAGGTGTAAACACTACCACACGAGACAATTCTATTGAATGCCCACAAAGACATCATAATTCTGATGATTTTCAGGTCATTTGGCAAGACAATATTGATCCTGACAACATGACCTATGAGGAATTACTTGAGTTAGGTGAGACTGTCGGAACTCAAAGCCGTGGTCTCTCCCAAGAACAGATCTCTTTGCTTCCAGTTTCAAAGTACAAGTGTGGGTTTTTCTTGTGGAAAAAATCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGAATCACCTTACCCTGCAAACACGTCTATCATGCTGGTTGTGGGAACACGTGGCTTAGCATTAATAAGGCTTGCCCTATATGTTACAAGGAGGTGTTTGCTGATGGGTCAAAACACAAATAA 744 0.4167 MSWNPHMEVHYNNISYPYSTAGSFIEYFEGLTYEHVNFIFSGASHTQESLYPSNTGFYKFGPSEPESTSYYRYSHGYEVNRHEPRMDERRRPSENSSAFNEQTAAVSTEWGEGVNTTTRDNSIECPQRHHNSDDFQVIWQDNIDPDNMTYEELLELGETVGTQSRGLSQEQISLLPVSKYKCGFFLWKKSRDERCVICQMEYKRGDKRITLPCKHVYHAGCGNTWLSINKACPICYKEVFADGSKHK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0131 247 Pfam Ring finger domain 194 235 IPR001841 -
Glsi04g0131 247 SMART ring_2 195 235 IPR001841 -
Glsi04g0131 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 240 IPR033276 GO:0004842|GO:0016567|GO:0046621
Glsi04g0131 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Glsi04g0131 247 ProSiteProfiles Zinc finger RING-type profile. 195 235 IPR001841 -
Glsi04g0131 247 SUPERFAMILY RING/U-box 187 241 - -
Glsi04g0131 247 FunFam E3 ubiquitin ligase BIG BROTHER 157 240 - -
Glsi04g0131 247 MobiDBLite consensus disorder prediction 82 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0131 Glsi-ChrGlsi04 976676 980469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0131 5 246 C3H Transcription Factor Family AT3G63530 44.355 4.54e-67 206