Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0127 ATGACCGATCCCTACTGCTCCAATGACTTCAATGGTTGGTTTGACCTCAATTCTCCTTGCCTTTTCTCTTCTTCATCATCTTCCTCCAATCCACCGCTCTATAATTTTCCTTCTAGTTATTATAACCGCACAAGCGGCATCTCTATTACTCAGTACCTGCCCTTACCCTCCTCTCCTCCTCTAAGAGAAGCCCTTCCTCTCCTTAACCGTAGCCCTACAAGACGTGAAGATCCTGAATCTTCCTGCGCAGCTATGGAAGTGGACAACAAGGACAAAGAGATTAGCAACTCCTCTACCTCTTTGGATGATGAAACTGTAACGGTGGCTTTACACTTAGGGCTTCCAACCACAAGTTCAACTGATTTAATTTCAGACAAAGAAGAAGTTACTGTTGCTTCTGCGTATCCGTCAAATAGAAATAATAGGGGTCAGTATTGGATCCCAACCCCTGCTCAGATTCTGATTGGTCCAACACAGTTCTCATGTCCTCTTTGTTTCAAGACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACGCAGCCAACAGCTATGCTTAGGCTCCCTTGCTATTGTTGTGCACCGGGATGCAAGAACAACATTGACCATCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGAGGTGATTGGAGAACACATGAGAAGAACTGTGGGAAACTCTGGTATTGCTCTTGTGGATCCGATTTCAAGCATAAAAGATCTCTTAAAGATCACATCAAAGCATTTGGACATGGCCACACATCTTTTGGTATAGACTGTCTTGATCAAGATGATGAAGCAGGCTCTGAAATTGAACAAGAAAATGATACCTTCCAATCGGACTGGGAATTATTTCAGTATTCTCCTTCAACTATCCATTACAGAGCTTTGGGTCCATTAAAGGCTTATGGGGTTGCAGAAACTCAAGAATGGCAATACACATCACACACCGATGGTGTAAGGCTTCCCCTCCATCTCCTTATACTACATGTGGCTACCAATGGGAACAGACATCCCAAGCATAGCCTCTGCAATTTCAGGGACATATTGTATCTTGCAAGGTTGTGCAATGCGCATGAGGCTGCCATTCCAGAGATAGTAAGCATGTGTTGCCTAATGAGGAGAAGTCATGAAATTACTTCCCAAAAGATTTATGATCCAAATGTAGTATTCATTTTGTTAGCCTTTCAAAGTGACAGAGAGAAACGCATCTCTCTCTCTCTCTCTCTCTCTCTCAGTTCTCCGTCCTCGGCTTTGCTTTCTCTCTCCTCATCGATCCCAAATCTACTAGGGATTACTATCCGATGCGATTCTGAGCTTATAGATCGGGCTGAAGGTTTCATTTCCCAGAATTTTCTTTTTCTTCCTGGCCAACAGGAAAGTTGA 1512 0.4345 MTDPYCSNDFNGWFDLNSPCLFSSSSSSSNPPLYNFPSSYYNRTSGISITQYLPLPSSPPLREALPLLNRSPTRREDPESSCAAMEVDNKDKEISNSSTSLDDETVTVALHLGLPTTSSTDLISDKEEVTVASAYPSNRNNRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHGHTSFGIDCLDQDDEAGSEIEQENDTFQSDWELFQYSPSTIHYRALGPLKAYGVAETQEWQYTSHTDGVRLPLHLLILHVATNGNRHPKHSLCNFRDILYLARLCNAHEAAIPEIVSMCCLMRRSHEITSQKIYDPNVVFILLAFQSDREKRISLSLSLSLSSPSSALLSLSSSIPNLLGITIRCDSELIDRAEGFISQNFLFLPGQQES 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0127 503 PANTHER ZINC FINGER PROTEIN WIP2 29 319 IPR043584 GO:0003700|GO:0010468
Glsi04g0127 503 SUPERFAMILY beta-beta-alpha zinc fingers 226 264 IPR036236 -
Glsi04g0127 503 FunFam Zinc finger protein WIP2 213 295 - -
Glsi04g0127 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Glsi04g0127 503 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0127 Glsi-ChrGlsi04 954386 965942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0127 1 315 C2H2 Transcription Factor Family AT1G51220 61.080 2.09e-131 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g0127 None None None