Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0124 ATGGGCTCAATGAACTCAAACAACTGGTTATCCTTCCCTCTTTCCCCTACTCATTCTTCCTTACCAGCACAACTCCAACCGACTCAATCCCATCAGTTTTCTCTTGGGTTAGTGAATGATAGCTTGGAAAACCCATTCCAAAACCACGGTACACTTCTATCTCTCTTTGTTTCTCTGCGTTGGATTTGTTTGCATAAGGCTAAGTACCTGTTCTCTTTGACATATACATGTTTTGGGGTATTTATTTTAATAAAAACAGATTGGAATCTGATAAATACTCACAGCAGCAACGAAGTTCCGAAGGTTGCAGATTTTCTAGGTGTGAGCAAGACTGAAAACCAGTCAGATCTTGCAGCTTTTAATGATATTCAGTCAAATGATTCAGGTTACCTATTCACAAACAACAGTCTCGTGCCTATGCAAAACTCAATAGTTGCCACATCTGGCAGCTACGAGTATCAAGAAAATGCCAACAGTAATTTGCAGTCGCTGACATTATCCATGGGCAGTGGTAAGGATTCGACATGTGAAACTAGTGGTGACAATAGTACTAATACAGCCGTTGAAGCTGCACCTAGAAGAACTTTAGATACATTTGGGCAGAGAACATCAATTTATAGAGGTGTAACAAGGCATAGATGGACTGGAAGGTATGAAGCTCATCTTTGGGATAACAGCTGTAGAAGGGAAGGGCAATCAAGAAAGGGTCGGCAAGGTGGGTATGATAAAGAAGAGAAAGCAGCTAGGGCCTATGATTTAGCGGCACTAAAGTACTGGGGAACATCCACAACTACCAACTTTCCAATCAGTAACTATGAGAAGGAGTTGGAGGACATGAAGCATATGACAAGACAAGAATTTGTGGCTGCCATACGAAGGAAGAGTAGTGGATTCTCTAGGGGTGCATCTATGTATCGCGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCAGAGTTGCAGGAAACAAGGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAAGCTGCAGAAGCTTATGACATAGCGGCGATAAAGTTCAGAGGTCTGAACGCAGTCACCAACTTTGACATGAGCCGTTATGACGTGAAAGCCATTCTTGAAAGCAACACTCTTCCAATAGGAGGAGGTGCTGCTAAACGACTAAAGGAAGCTCAAGCTCTGGAATCTTCTAGAAAAAGGGAGGAAATGATAGCACTGGGCTCAACTTTTCAATATGGAAGCAGCAGCTCTAGCAGGCTACAAGCTTACCCTCTCATGCAGCAGCAGTTAATTGATCAGCCTCAACCTTTATTAACCCTACAGAACCAGGACATTTCTCAGTACTCCCAGCTCCCTTCACTTCATCCCAATTATATTCAGTTGCACCAGCAAAGCGGGTCTTATAACTTCCATCAAACAGCTCAGAATGCTCAGTTCTACAACGGCTACCTTCAAAACCACCCATCTTTGCTTCAGGGACTGATGGAGAATGATGGGGGCCCGGGTGGGTCGAGTGGGAGTTACAGTGGAGGGTTTATGGGGAATGGGCTTGGGATGGCTCCGAATTCCACTTCGGAGGAACTTGCCATGGTTAAGGTTGACTATAACATGCCATCCGGAGGATATGGCGGATGGTCGTCGGCGGACTCCATGCAGGGATCAAATGCTGGTGTGTTTACTATGTGGAATGACTGA 1692 0.4468 MGSMNSNNWLSFPLSPTHSSLPAQLQPTQSHQFSLGLVNDSLENPFQNHGTLLSLFVSLRWICLHKAKYLFSLTYTCFGVFILIKTDWNLINTHSSNEVPKVADFLGVSKTENQSDLAAFNDIQSNDSGYLFTNNSLVPMQNSIVATSGSYEYQENANSNLQSLTLSMGSGKDSTCETSGDNSTNTAVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSTFQYGSSSSSRLQAYPLMQQQLIDQPQPLLTLQNQDISQYSQLPSLHPNYIQLHQQSGSYNFHQTAQNAQFYNGYLQNHPSLLQGLMENDGGPGGSSGSYSGGFMGNGLGMAPNSTSEELAMVKVDYNMPSGGYGGWSSADSMQGSNAGVFTMWND 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0124 563 CDD AP2 204 270 IPR001471 GO:0003700|GO:0006355
Glsi04g0124 563 ProSiteProfiles AP2/ERF domain profile. 205 268 IPR001471 GO:0003700|GO:0006355
Glsi04g0124 563 Gene3D AP2/ERF domain 205 270 IPR036955 GO:0003700|GO:0006355
Glsi04g0124 563 Gene3D AP2/ERF domain 304 364 IPR036955 GO:0003700|GO:0006355
Glsi04g0124 563 SUPERFAMILY DNA-binding domain 303 364 IPR016177 GO:0003677
Glsi04g0124 563 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 100 450 - -
Glsi04g0124 563 Pfam AP2 domain 305 354 IPR001471 GO:0003700|GO:0006355
Glsi04g0124 563 Pfam AP2 domain 205 260 IPR001471 GO:0003700|GO:0006355
Glsi04g0124 563 PRINTS Ethylene responsive element binding protein signature 344 364 IPR001471 GO:0003700|GO:0006355
Glsi04g0124 563 PRINTS Ethylene responsive element binding protein signature 206 217 IPR001471 GO:0003700|GO:0006355
Glsi04g0124 563 ProSiteProfiles AP2/ERF domain profile. 304 362 IPR001471 GO:0003700|GO:0006355
Glsi04g0124 563 SMART rav1_2 304 368 IPR001471 GO:0003700|GO:0006355
Glsi04g0124 563 SMART rav1_2 205 274 IPR001471 GO:0003700|GO:0006355
Glsi04g0124 563 SUPERFAMILY DNA-binding domain 204 270 IPR016177 GO:0003677
Glsi04g0124 563 CDD AP2 303 364 IPR001471 GO:0003700|GO:0006355
Glsi04g0124 563 FunFam AP2-like ethylene-responsive transcription factor 303 364 - -
Glsi04g0124 563 FunFam AP2-like ethylene-responsive transcription factor ANT 204 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0124 Glsi-ChrGlsi04 941448 943901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0124 4 563 AP2-EREBP Transcription Factor Family AT1G51190 60.586 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi04g0124 AP2 2.6e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0124 04 941448 943901 Glsi04g0124 04 941448 943901 ECH