Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0119 ATGGAGTCAGATCTCCAACAGCACCCTTCTATGTTTCATGAACATCAGCAGCAGCAGCAGCAGCAGCACAATTCCGGCCTGACACGGTACCGATCGGCACCAAGCTCATATTTTACGAATATCATCGACGGGGAGTTCTATGAGCACATTTTCAATCGCCCTTCCAGCCCTGAAACAGAGCGAGTTTTTTCCCGGTTCATGAATAGCCTTGGGGATGGTGGTGACTCAGAAGATCCACTTCCTCAATATCCCTCACCTGTTCGGCAAAATTCTTCAGTGAAGGATGAGATTAACGAGCAGCCTCAGATTATGCCTTCCATGAATAATGAACCCGTGGTTCTACAGCAGCAGCAGCAGCAGAATATTAATAATTTTGCTTCTGCTCCTCATAATGTTTACCAAAGCTCAGGGCGACCACCTTTGCCGAAACAGAGCCTGACCTCAGCTATGGAAGCAACATATTCAACGGGAGTTCCTCCGTTGCCACCTATGAAGACTGGTATTGGAAATAATTCCAATCTAATCAGGCATAATAGTTCGCCTGCAGGACTCTTTTCCCACATAAACATCGAAACCGGCTATGCTGCTATGAGAGGCTCAGGGACATTAGGAGGAGCTGGTAATAACACTAGCGTAGAAGCAATCTTTTCTCCTGGGCGGAGGTTGAAAAATCTATCAAAATACTCGTCAGGCCTAATGTCATCCATGGCTGAAATTGGGGACAAAAGCTATAGCAAAAATGACCCGGACAGTGAAGCTTTTGGTGAAAGCCAGGGTAATGAATTTATCACTGATTTCCCCGCAGATACTTGGGATGATTCTGCAATCATGTCCGACAATAGTTCTGGTCTAAAAAGATATAGAGATGATGATGCAAAAACATTTTCTGGTTTAAAAGCAGCTGAAAATCAGACTGAGAGAGGAAACCAGGCTCGTGCTGCTCCGCTGGCTCATCACTTGAGTTTGCCTAAAACTTCAGCGGAAATGGCAGCTATTGAAAAGTTTCTGCAGTTCTCAGATTCTGTTCCCTGTAAAATTCGTGCCAAGAGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTGGTGCCCAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTAGCTGTGGAGTACATTAAAGACCTTCAAAATCAAGTTCAGACACTTTCAGACAGTCATGCCAAGTGCACGTGTTCACACGAGCAGGGGCAATAA 1275 0.4525 MESDLQQHPSMFHEHQQQQQQQHNSGLTRYRSAPSSYFTNIIDGEFYEHIFNRPSSPETERVFSRFMNSLGDGGDSEDPLPQYPSPVRQNSSVKDEINEQPQIMPSMNNEPVVLQQQQQQNINNFASAPHNVYQSSGRPPLPKQSLTSAMEATYSTGVPPLPPMKTGIGNNSNLIRHNSSPAGLFSHINIETGYAAMRGSGTLGGAGNNTSVEAIFSPGRRLKNLSKYSSGLMSSMAEIGDKSYSKNDPDSEAFGESQGNEFITDFPADTWDDSAIMSDNSSGLKRYRDDDAKTFSGLKAAENQTERGNQARAAPLAHHLSLPKTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQNQVQTLSDSHAKCTCSHEQGQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0119 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 402 IPR011598 GO:0046983
Glsi04g0119 424 MobiDBLite consensus disorder prediction 1 31 - -
Glsi04g0119 424 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 420 - -
Glsi04g0119 424 Gene3D - 353 422 IPR036638 GO:0046983
Glsi04g0119 424 SMART finulus 358 408 IPR011598 GO:0046983
Glsi04g0119 424 FunFam Transcription factor bHLH130 family 353 422 - -
Glsi04g0119 424 MobiDBLite consensus disorder prediction 67 94 - -
Glsi04g0119 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 417 IPR036638 GO:0046983
Glsi04g0119 424 Pfam Helix-loop-helix DNA-binding domain 357 403 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0119 Glsi-ChrGlsi04 911057 913298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0119 1 419 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 42.105 9.17e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi04g0119 HLH 4.3e-10 No_clan