Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi04g0112 | ATGCAGAAGCCACCGCAGCCTGTAGACTTTGCCCTGAAGGAGACCTCGCCCAACATTGGGGCAGGAAATATCACAGGGGATAAGCTGTCATGCACCTATGACCTGGTTGAACAAATGCAGTATCTGTATGTTCGTGTGGTCAAAGCCAAAGATTTACCTGGGAAGGATGTCACCGGTAGTTTGGATCCCTATATTGAAGTGAAACTTGGGAACTACAAGGGGGTTACCAAGCATTTTGAGAAGAAGTCTAATCCTGAGTGGAATCAGGTTTTTGCCTTCTCAAAAGAGCGAATTCAAGCTTCAGTTTTGGAAGTGGTTGTGAAAGATAAGGATGTTGTTGTGGATGACTTGGTGGGGAGGGTCTTGTTTGACCTGAACGAAATTCCAAAACGTGTTCCCCCGGACAGCCCATTGGCTCCACAGTGGTATAGGCTGGAGAATCGCAAGGGTGATAAAGCTAAGGGAGAGCTAATGCTGGCTGTTTGGATGGGAACTCAAGCAGATGAGGCATTTCCAGATTCATGGCATTCTGATGCAGCATCAGTTGGTCCTGAAGCGGTTGCAAACATAAGATCCAAGGTGTACCTTTCTCCCAAGCTTTGGTATGTCAGGGTCAATGTAATTGAAGCTCAGGACTTGGTACCAAATGATAAAAGCCGATATCCTGAAGTTTTTGTGAAGGTCAATATAGGGCATCAGTTTTTGAGAACTAGAATATCTCAAAGTAAGACTATAAATCCTATGTGGAATGAGGATTTGATGTTTGTTGCTGCTGAGCCATTTGAGGAACCCTTGATTCTGACTGTGGAAGACCGAGTTGGACAAAACAAAGATGAAATCCTGGGAAGGTGTGTGATTCCTCTGCAAACTGTGCAAAGGAGGTTAGACCATAAGCCTGTGAACACTAGGTGGTATAATCTCGAGAGACATGTGACTGTTGAAGGGGAACAGAAGAAGGAAATCAAATTCGCAAGTAGGATACATTTGAGGGCGTGTTTGGATGGGGGGTATCATGTGTTGGATGAATCTACTCATTACAGTAGCGATCTCAGGCCAACTGCAAAACAGCTGTGGAAGTCCAGCATTGGAATTCTGGAAGTTGGGATTATAAGTGCGCAAGGGTTGATGCCGATGAAGACAAAAGATGGTCGAGGAACCACAGATGCTTATTGTGTAGCTAAATATGGACAGAAATGGATCCGCACGAGGACAATCGTTGGTAGCTTTGGTCCAAAGTGGAATGAGCAGTACACTTGGGAAGTTTTTGATCAATGTACTGTTATAACAGTTGGGGTTTTTGATAATGGTCATATACAAGGAGGAGACAAATCTGGAGGATCAAAGGATTCAAGGATAGGGAAGGTGAGGATTAGGCTATCCACTCTTGAAGCCGACAGGGTTTACACACACTCATATCCTCTATTGGTACTGCATAATTCAGGTGTGAAGAAAATGGGGGAACTTCATTTGGCTGTGAGGTTCACAAGCTTATCTTTAATTAATATGTTGTATATGTATTCACAACCACTGTTGCCCAAGATGCACTACATCCATCCTCTATCTGTGATTCAGCTGGACAGTTTGAGGCATCAAGCCATGCAGATTGTCTCGATGAGGTTGAGCCGGGCCGAGCCACCGCTGAGGAAAGAGGCAGTGGAATACATGCTGGATGTAGATTCACACATGTGGAGTATGAGGAGAAGCAAAGCTAATTTCTTCAGAATAATGAAAGTTCTAGGCTGTTTGATTGCCATTGGGAGGTGGTTTGATCAGATCTGCTATTGGAAAAACCCTCTCACAACCATTCTAATCCATATCCTTTTCATAATATTGGTTCTCTACCCAGAGCTAATACTTCCCACAATTTTCCTGTACCTATTCTTGATTGGAATTTGGAACTTCCGGTGGAGGCCAAGACATCCTCCGCACATGGACACTCGACTGTCTCATGCCGATGCTGCTCATCCGGATGAATTGGATGAAGAGTTTGACACATTCCCAACTTCTCGGTCATCGGATATTATTCGGATGAGGTACGATCGCCTGAGAAGCATCGGAGGAAGGGTCCAAACTGTTGTAGGTGACCTGGCCACTCAAGGAGAAAGGCTTCAGAATCTGCTAAGTTGGAGAGATCCAAGGGGTACCACTCTGTTTGTGACGTTCTGTTTCATTGCTGCTATAGTTCTCTACGTGACTCCCTTCCAAGTTGTGTGCCTTCTCATAGGCTTCTATGTGCTAAGGCATCCAAGATTTCGCCAGAAACTTCCATCAGTTCCACTCAACTTCTTTAGGAGGTTGCCTGCCAGATCAGACAGCTTGTTGTAA | 2325 | 0.4482 | MQKPPQPVDFALKETSPNIGAGNITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSLDPYIEVKLGNYKGVTKHFEKKSNPEWNQVFAFSKERIQASVLEVVVKDKDVVVDDLVGRVLFDLNEIPKRVPPDSPLAPQWYRLENRKGDKAKGELMLAVWMGTQADEAFPDSWHSDAASVGPEAVANIRSKVYLSPKLWYVRVNVIEAQDLVPNDKSRYPEVFVKVNIGHQFLRTRISQSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVGQNKDEILGRCVIPLQTVQRRLDHKPVNTRWYNLERHVTVEGEQKKEIKFASRIHLRACLDGGYHVLDESTHYSSDLRPTAKQLWKSSIGILEVGIISAQGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIVGSFGPKWNEQYTWEVFDQCTVITVGVFDNGHIQGGDKSGGSKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHNSGVKKMGELHLAVRFTSLSLINMLYMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSMRLSRAEPPLRKEAVEYMLDVDSHMWSMRRSKANFFRIMKVLGCLIAIGRWFDQICYWKNPLTTILIHILFIILVLYPELILPTIFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRSSDIIRMRYDRLRSIGGRVQTVVGDLATQGERLQNLLSWRDPRGTTLFVTFCFIAAIVLYVTPFQVVCLLIGFYVLRHPRFRQKLPSVPLNFFRRLPARSDSLL | 774 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi04g0112 | 774 | ProSiteProfiles | C2 domain profile. | 346 | 472 | IPR000008 | - | |
| Glsi04g0112 | 774 | FunFam | C2 domain-containing protein | 346 | 498 | - | - | |
| Glsi04g0112 | 774 | Gene3D | C2 domain | 361 | 498 | IPR035892 | - | |
| Glsi04g0112 | 774 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 41 | 178 | IPR035892 | - | |
| Glsi04g0112 | 774 | CDD | C2B_MCTP_PRT_plant | 41 | 165 | IPR047257 | - | |
| Glsi04g0112 | 774 | Pfam | C2 domain | 201 | 307 | IPR000008 | - | |
| Glsi04g0112 | 774 | Pfam | C2 domain | 41 | 134 | IPR000008 | - | |
| Glsi04g0112 | 774 | Pfam | C2 domain | 363 | 474 | IPR000008 | - | |
| Glsi04g0112 | 774 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 354 | IPR035892 | - | |
| Glsi04g0112 | 774 | Gene3D | C2 domain | 187 | 331 | IPR035892 | - | |
| Glsi04g0112 | 774 | Gene3D | C2 domain | 28 | 163 | IPR035892 | - | |
| Glsi04g0112 | 774 | PANTHER | PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 | 8 | 774 | IPR047259 | - | |
| Glsi04g0112 | 774 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 363 | 508 | IPR035892 | - | |
| Glsi04g0112 | 774 | CDD | C2C_MCTP_PRT_plant | 202 | 352 | IPR047258 | - | |
| Glsi04g0112 | 774 | Pfam | Plant phosphoribosyltransferase C-terminal | 619 | 774 | IPR013583 | - | |
| Glsi04g0112 | 774 | FunFam | C2 domain-containing protein | 36 | 180 | - | - | |
| Glsi04g0112 | 774 | ProSiteProfiles | C2 domain profile. | 181 | 305 | IPR000008 | - | |
| Glsi04g0112 | 774 | ProSiteProfiles | C2 domain profile. | 23 | 143 | IPR000008 | - | |
| Glsi04g0112 | 774 | SMART | C2_3c | 41 | 137 | IPR000008 | - | |
| Glsi04g0112 | 774 | SMART | C2_3c | 364 | 471 | IPR000008 | - | |
| Glsi04g0112 | 774 | SMART | C2_3c | 202 | 300 | IPR000008 | - | |
| Glsi04g0112 | 774 | FunFam | C2 domain-containing protein | 188 | 333 | - | - | |
| Glsi04g0112 | 774 | CDD | C2D_MCTP_PRT_plant | 364 | 491 | IPR047255 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi04g0112 | Glsi-ChrGlsi04 | 865788 | 868112 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi04g0112 | 1 | 774 | Lipid Metabolism Gene Families | AT3G57880 | 82.581 | 0.0 | 1365 |