Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0099 ATGGACTCCGAGGATGATATGCATGATGCCAATGATGTCGAATCACTTGATGACGATTTTTACAGCGGTGAGACCGAGGATGCTCCTTTGGATTACTACAGCGACTACGATGATGATGCAGATGATTATATTGATGATGCTGATGATACCGACAGGATTGAGTCTCGTCGCCCCGAGCAAAATTTTACCGTCTTGAAGGATTTAGATATCCGGCAAAGACAGGAGGATGATATCACGAGAGTAGCGACAGTTCTTTCCATATCACGAGTTGCTGCTAGCATCTTACTTCGTCACTATAATTGGAGTGTCAGCAAAGTCCATGATGAATGGTTTGCTGATGAAGAACATGTCCGAAAAGCTGTTGGCTTGTTGGAGAAGCCACTTGTACAGTTTCCTAGTGATAGGGAGCTTACTTGTGGCATCTGTTTTGACACTTATCCTTGCTCTCGGATTGAATCTACTGCTTGTGGCCATCCCTATTGTGTCTCGTGTTGGCAAGGGTATATTGGGACATCCATTAACGATGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCCTCTTGTGGTGCTGCTGTTGGTCAAAATATGATTAATCAATTAGCATCTAATGAGGATAAGGAGAAGTATGCTCGTTACGTTCTTAGGTCTTATATTGAAGACAACAAAAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCGGTTACATTTGATGCTGGTAGTGGAAACTATGATGTTTCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACGGAAGAGGCTCACCGTCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGCGCAGAGTCTGAAAATATGAACTGGATACTAGCCAACTCCAAGCCCTGTCCCAAGTGTAAGCGACCAATTGAAAAAAACCAGGGGTGCATGCACATGACATGTACTCCCCCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGACAGACCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAATCGTTATGAGGCAGCTAAACAAGAGGGAGTGTATGATGAATCTGAAAGAAGACGAGAAATGGCAAAAAATTCGTTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCATCGAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAAAATGTGCATATTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCACAGCTGAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTAAAGTGGACATATGCATATGGGTACTATTTACCTGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCCGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTGCAGCATTACCTCAATGCTGATGGCCCATCTAGAGAATTTAATGACTTCCGTACAAAGTTAGCTGGATTGACCAGTGTGACAAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTAACTGATGTGGACAGTAATGGAGCTGCTTCCAGTAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGTAAAGGAACTACTCGAACCAGCAATTCCAACAGAATGACTGATGATTATAATTGGTTTTGTGAGCATTGTACCTATGCAAATGGTGCATCTGTTGCCACATGCCAGATGTGCCATCAACAGCGTCGATGA 1773 0.4377 MDSEDDMHDANDVESLDDDFYSGETEDAPLDYYSDYDDDADDYIDDADDTDRIESRRPEQNFTVLKDLDIRQRQEDDITRVATVLSISRVAASILLRHYNWSVSKVHDEWFADEEHVRKAVGLLEKPLVQFPSDRELTCGICFDTYPCSRIESTACGHPYCVSCWQGYIGTSINDGPGCLMLRCPDPSCGAAVGQNMINQLASNEDKEKYARYVLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWTDHGERTGGFYACNRYEAAKQEGVYDESERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQNVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQHYLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLTDVDSNGAASSKATSSKNAAGSSKGRGGRGKGTTRTSNSNRMTDDYNWFCEHCTYANGASVATCQMCHQQRR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0099 590 MobiDBLite consensus disorder prediction 522 557 - -
Glsi04g0099 590 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Glsi04g0099 590 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Glsi04g0099 590 SUPERFAMILY RING/U-box 134 220 - -
Glsi04g0099 590 SUPERFAMILY RING/U-box 289 337 - -
Glsi04g0099 590 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Glsi04g0099 590 CDD BRcat_RBR_ANKIB1 215 279 - -
Glsi04g0099 590 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Glsi04g0099 590 SMART ibrneu5 208 270 IPR002867 GO:0008270
Glsi04g0099 590 SMART ibrneu5 274 344 IPR002867 GO:0008270
Glsi04g0099 590 MobiDBLite consensus disorder prediction 522 540 - -
Glsi04g0099 590 MobiDBLite consensus disorder prediction 1 51 - -
Glsi04g0099 590 Pfam Ariadne domain 357 519 IPR045840 -
Glsi04g0099 590 CDD Rcat_RBR_ARI7-like 293 347 - -
Glsi04g0099 590 SUPERFAMILY RING/U-box 208 277 - -
Glsi04g0099 590 Gene3D - 266 521 - -
Glsi04g0099 590 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Glsi04g0099 590 SUPERFAMILY Ran binding protein zinc finger-like 562 589 IPR036443 -
Glsi04g0099 590 MobiDBLite consensus disorder prediction 1 48 - -
Glsi04g0099 590 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Glsi04g0099 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Glsi04g0099 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Glsi04g0099 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 221 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0099 Glsi-ChrGlsi04 786305 795190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0099 17 589 ARIADNE family AT1G65430 70.548 0.0 844