Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0097 ATGGGAAGCTGCATATCCACGCCGGGCAAAGCATTTCCTCGCAAGAGGTCAAAGGACCTCGTCAAGTCTTCTACTCCCAAACCTGACCACGAACCTTACGCGCCCCCGCCGCATAAGACTGTCACCACCCGCCCCGTCAACGTAGTAGCGAACCCCGCCCAGGGCGACATCTTCGGCAAATACCAGTTCGGAAAGGAACTAGGACGAGGGGAATTTGGGGTGACGTATCGATGTTTGGACCTTCAAACGGGGCAGGCATTTGCGTGCAAGAAGATTGCGAAAACGAAGCTGAGGACGGAGATTGATATTCAAGATGTGAGGAGAGAAGTGCAGATCATGAGGCATTTGCCCAAACATCCTAATATTGTGAGTTTCAGGGAGGCTTATGAGGACAAAGAAGCTGTCTATCTTGTTATGGAGCTTTGTGAAGGTGGCGAACTCTTTGACAGAATCGTCGCTAAAGGCCATTACACCGAACGTGCTGCTGCCAATGTCACCAAGACAATTCTTGAGATTTGCAAGGTATGCCATGAACACGGGGTAATACACAGGGACTTAAAACCTGAGAACTTCTTATTCGCAGATGCAAGTGAGAGTTCTCCAGTAAAGGCAATCGATTTTGGCCTTTCCACCTTCTATGAATCTGGGCAGAGGTTCAGCGAAATTGTTGGAAGTCCCTACTACATGGCTCCAGAGGTGTTAAAACGTAACTATGGACCAGAAATTGATGTGTGGAGCGCAGGCGTAATCCTTTATATTCTACTTTGCGGAGTTCCACCCTTTTGGGCAGAAACTGAGGAAGGAATTGCACAGGCCATCATCCGGGGTAACATAGATTTTGAAAGAGATCCTTGGCCTAAGGTTTCGGAGGAAGCAAAAAGTCTAGTTAAAAGTATGCTTGATCCAAATCCTTACAACCGATTAACTGGTCAAGAAGTTCTTGATCATCCCTGGATACAAAATAGGGACCAGGGTCGAAATGTTTGTCTAGGAGACAATGTCAAAATGAGGATCAAGCAATTCTCCTTGATGAACAAGTTCAAGAAGAAAGTTCTTAGAGTGGTGGCAGATAACCTGCCAGATGAACAAATAGATGGGATCAAGAAAATGTTCCATATGATGGACAAGGATAAAAATGGAAACTTGTCATTTGAAGAGCTCAGAGACGGCCTTTCTAGAATTGGACACTCTCTTCCTGATCCTGATGTGCACATGTTAATGGAGGCGGCGGATATTGATGGAAACGGCACACTGAATTGTGAAGAGTTTATCACAATGAATGTTCATCTGGGAAAGATTAGCAGCGACGAGCATCTCTCAGAAGCTTTCTGTTACTTTGACAAGAATCGGAGTGGATTTGTTGAGTTTGAGGAATTGAAAGATGCCTTGTTGGATGAGGGATTAGGTCTCAGTAATGAGCAGGTGATCCACGACATCATATTTGAAGTGGACTTGGATAAGGACGGTCGAATCAGTTTTGAGGAGTTCAAGGCAATGATGAAGACAGGACCAGACTGGAAAATGGCTTCTCGCCAGTATTCAAGAGCAATGCTAAATGCATTGAGCTTCAAGATGTTCAAAGACAAATCTGTGAAGTGTCTCTAA 1605 0.4523 MGSCISTPGKAFPRKRSKDLVKSSTPKPDHEPYAPPPHKTVTTRPVNVVANPAQGDIFGKYQFGKELGRGEFGVTYRCLDLQTGQAFACKKIAKTKLRTEIDIQDVRREVQIMRHLPKHPNIVSFREAYEDKEAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILEICKVCHEHGVIHRDLKPENFLFADASESSPVKAIDFGLSTFYESGQRFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAETEEGIAQAIIRGNIDFERDPWPKVSEEAKSLVKSMLDPNPYNRLTGQEVLDHPWIQNRDQGRNVCLGDNVKMRIKQFSLMNKFKKKVLRVVADNLPDEQIDGIKKMFHMMDKDKNGNLSFEELRDGLSRIGHSLPDPDVHMLMEAADIDGNGTLNCEEFITMNVHLGKISSDEHLSEAFCYFDKNRSGFVEFEELKDALLDEGLGLSNEQVIHDIIFEVDLDKDGRISFEEFKAMMKTGPDWKMASRQYSRAMLNALSFKMFKDKSVKCL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0097 534 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Glsi04g0097 534 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Glsi04g0097 534 SMART serkin_6 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0097 534 ProSiteProfiles Protein kinase domain profile. 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0097 534 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Glsi04g0097 534 Pfam EF-hand domain pair 379 426 IPR002048 GO:0005509
Glsi04g0097 534 SUPERFAMILY Protein kinase-like (PK-like) 57 324 IPR011009 -
Glsi04g0097 534 MobiDBLite consensus disorder prediction 1 43 - -
Glsi04g0097 534 FunFam Calcium-dependent protein kinase 1 63 146 - -
Glsi04g0097 534 Pfam Protein kinase domain 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0097 534 Gene3D Transferase(Phosphotransferase) domain 1 147 328 - -
Glsi04g0097 534 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Glsi04g0097 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Glsi04g0097 534 SUPERFAMILY EF-hand 348 515 IPR011992 -
Glsi04g0097 534 FunFam calcium-dependent protein kinase 13 147 327 - -
Glsi04g0097 534 SMART efh_1 402 430 IPR002048 GO:0005509
Glsi04g0097 534 SMART efh_1 366 394 IPR002048 GO:0005509
Glsi04g0097 534 SMART efh_1 475 503 IPR002048 GO:0005509
Glsi04g0097 534 SMART efh_1 438 466 IPR002048 GO:0005509
Glsi04g0097 534 MobiDBLite consensus disorder prediction 12 26 - -
Glsi04g0097 534 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Glsi04g0097 534 Pfam EF-hand domain pair 437 501 IPR002048 GO:0005509
Glsi04g0097 534 CDD STKc_CAMK 60 318 - -
Glsi04g0097 534 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Glsi04g0097 534 Gene3D Phosphorylase Kinase; domain 1 63 146 - -
Glsi04g0097 534 FunFam Calcium-dependent protein kinase 7 328 504 - -
Glsi04g0097 534 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Glsi04g0097 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 493 - -
Glsi04g0097 534 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Glsi04g0097 534 Gene3D - 329 502 - -
Glsi04g0097 534 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0097 Glsi-ChrGlsi04 781957 784489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0097 1 528 EF-hand Containing Proteins AT2G31500 67.784 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi04g0097 Pkinase 1.3e-76 CL0016