Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0091 ATGTATCCAAAACGGTCTAGCAAAGGGGATGGTCTTGTTTCCAGGCCAGTGCGTACAAGTGATAGGATAAAGACAAGGCCAAATGTGTATGGCCGGCCATACCTATATTATAACTCAAATGTTAAGCGCTCCAGGAGAAGCAAGAACAAGACAAGGATAGCTGCTTCACAGATTGCCAAGATGTTGCACCCAAAGAAACGACCAGCACAAGATTCAAATGCTCATTCTGCATCTACCAACCTTCGACGCTCAACTAGGAAGAGAAGGATTTCTGTGAATCTTGAAGGTTTCACAGACAGCTCTGGAGCAGAGGATGAAGATTTAATGAGACCTACATATCATTCTTTGAGAAACCAGATTGACAATAGTGTCAGTCAGGATGAGTTGATGTCTCCCAAGTGCAAAATATCAGTGAAGACTAAATTAACATCTCGACGTGAAGGTCTGAGACCTCGTCGTATGAAGGTTGTTGCAAGAGAAAAATTGAATTCAGAATCAGATGATGAGCAAGACTTTTCAGAAGAGAAGGTTGGACAAGATGAAACAGATAATGGGAACGATGTTGAGGAAAATGATGCAGATGATGATCAGAATGAGATTGAAGGGGATGCTGAGGGTGAAGATGAAGATGAAGATGAAGATGAGGGTGAGGATGAAGGGGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGATATGATCTTCGAAATCGTGCAGATGTCCGCAGGCACTCTATGGATGAAAGGAAGGCCCGATCAAGATCTCCTCGAAGAGTGCTACATCAAGGTATGGGCACTAAGGTCAACAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCAAGACCTGATGATTCTGATGACTCCATCCTTGTGGATGAGCTGGACCAAGGTCCTGCTATTCCTTGGAATCGAGGTGGTAGCAGATCTGGCCCTCCTTGGCTTTTTGGGGGATTAGATATGCATGGAACAACGGCATGGGGATTAAATCTTGCTGCATCAGGTTGGGGTCACCAGAGTGATGCTTTGGCTACCTTGACATCTGGGATTCAAACTGCTGGACCAAGCTCTAAGGGAGGGGCAGATATACAACCTTTACTTGTTGATGACAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATATATTGATGCTCTCAAGGAGATGGTTTTCTTTCCATTGCTTTATCCAGATTTCTTTGCAAGTTACCACATTACTCCACCTAGGGGGGTGTTGTTATGTGGGCCCCCTGGCACTGGAAAAACATTAATTGCAAGAGCTTTGGCATGTGCTGCTTCAAAAGCTGGCCAGAAGGTTAGCTTTTATATGCGTAAAGGAGCAGATGTGCTGAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCGCCTGTGAGGTCTAGTAAGCAGGAACAAATTCACAATTCCATTGTGTCCACTCTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAGGTTGTTTTAATTGGAGCCACCAACAGGATTGATGCTATTGATGGAGCCTTGCGGCGCCCTGGTAGATTTGATCGAGAATTTAACTTTCCTTTACCTGGTTGTGAGGCACGTACTGAAATATTAGATATTCATACTCGCAAATGGAAGCATCCTCCTTCAAAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGGTATTGCGGTGCTGACCTAAAGGCTCTCTGTACTGAAGCTGCCATTCGTGCTTTTCGTGAAAAATATCCACAGGTTTATACAAGTGATGACAAATTTCTCATAGATGTTGATTCGGTCAAGGTTGAGAAGTATCACTTTATTGAAGCAATGTTGACGATTACTCCTGCTGCTCATAGGGGTGCAATAGTGCACACTAGGCCATTGTCGCTAGTAGTTCAACCATGTCTACAAAGATATATGGAGAAAATCATGAATATTATATCTGATATTTTCCCTCCAGTTGCTGTTGCATCAGAACTGAGCAAGCTTTCGATACTTTCCTATGGTTCTGCAATTCCACTGGTGTATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGTACTGGACTGGATCATCTTGGGCCTGCTGTTTTACATGAACTGGAAAAATTTCCTGTTCATTCCTTGGGACTTCCATCTCTTCTTTCAGATCCTAGTGCGAAGACACCAGAGGAGGCATTGGTACATATATTTGGTGAAGCTAGAAGAGCAACGCCATCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGCAACTGCTCATGAACAGCTCAGGGCTGTTCTTCTGACTTTGCTAGAAGAATTGCCATCTAACTTACCTATATTACTACTTGGAACATCCTCAGTTCTACTTGCTGAAATTGATGAAGTGCCTCCTTCAGTTTTCCCTCACCGTTCAGTCTATCAAGTGAACATACCGTCTACTGAAGATAGGACTTCATTTTTCAATCGTTTGATAGAAGCTGCTTTGTCAGTCTTCCCAGAGGGAAGGAGCAAAAAATCCCAGGATACAGAATCCCTACCTGAACTTCCCAAGGCACCAAAGTTGGCAAGTGGTCCAAAGGTATTTGAGCTAAAAGCAAAGGTTGAAGCTGAGCAGCATGCCCTTCGAAGATTGCGAATGTGCCTTAGAGATGTTTGTAATCGGATATTATATGACAAAAGATTTAATGCCTTCCATTATCCAGTCTTAGATGATGATGCACCTAATTATCGCACAATTATTCAAAATCCGATGGACATGGCTACCATGCTGCAGCATGTTGACAATGGCCACTACATTACATGTTCAGGATTCTTACAGGACATAGATCTTATTGTTTCCAATGCGAAGGCTTACAATGGAGAAGACTACAATGGCTCTAGGATTGTCAGTAGAGCTTGTGAGCTATGTGATGCAGTGCATGGAATGCTCTCACAGATGGATCCTGCACTGGTTGCATACTGTGACAAGATTGCTGCCCAAGGTGGCCCACTTCATCTGCCTGACGAATTAGAGTCTACATTCCCTTCTACTCCTGTTGTACAGCTGGGAACCACTACTAGAATGAGTGCTCGTCTCCGTAATGTCCAACCAGAGGTTAATATGGATCAAAGCTATGAAGTATTGAAGCGGACGAAGAAGAGCATTGATGTTGCATATGCAGAAGACAGATCGCTACAAGACTCAGTATTGTCAAAGACTTCACAGGAATATCAGGCGAATAATATAGCTTCAGAAAGGCTGGAACCTGCCTCAAGCGATGGAAATCTGCATGGAACTTGCACTAGTAGCCATGTTGATGGGAGCAGTTCTGAAGATATTACAATTTTGCATGGTGAATTCTCAAGCCAAGTGGAGTCTGTCAAGCAGTTTTTTGTGAAGCGTAGTGAAAATTACACCATTCCGCAGCTTGAAAGGCTTTACACCAGAATTATGAAGGGCGTTTTTGAAATCAAAGCTAAAGGAATGAAGGAAGGTCCAAAGACTTGTGTTTTGAGGTTTTTGTTGAAATTTGTAGAGGATGATGCTAACTTCTGA 3621 0.4322 MYPKRSSKGDGLVSRPVRTSDRIKTRPNVYGRPYLYYNSNVKRSRRSKNKTRIAASQIAKMLHPKKRPAQDSNAHSASTNLRRSTRKRRISVNLEGFTDSSGAEDEDLMRPTYHSLRNQIDNSVSQDELMSPKCKISVKTKLTSRREGLRPRRMKVVAREKLNSESDDEQDFSEEKVGQDETDNGNDVEENDADDDQNEIEGDAEGEDEDEDEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRADVRRHSMDERKARSRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLARPDDSDDSILVDELDQGPAIPWNRGGSRSGPPWLFGGLDMHGTTAWGLNLAASGWGHQSDALATLTSGIQTAGPSSKGGADIQPLLVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARTEILDIHTRKWKHPPSKELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVKVEKYHFIEAMLTITPAAHRGAIVHTRPLSLVVQPCLQRYMEKIMNIISDIFPPVAVASELSKLSILSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRATPSILYLPQFDVWWATAHEQLRAVLLTLLEELPSNLPILLLGTSSVLLAEIDEVPPSVFPHRSVYQVNIPSTEDRTSFFNRLIEAALSVFPEGRSKKSQDTESLPELPKAPKLASGPKVFELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVLDDDAPNYRTIIQNPMDMATMLQHVDNGHYITCSGFLQDIDLIVSNAKAYNGEDYNGSRIVSRACELCDAVHGMLSQMDPALVAYCDKIAAQGGPLHLPDELESTFPSTPVVQLGTTTRMSARLRNVQPEVNMDQSYEVLKRTKKSIDVAYAEDRSLQDSVLSKTSQEYQANNIASERLEPASSDGNLHGTCTSSHVDGSSSEDITILHGEFSSQVESVKQFFVKRSENYTIPQLERLYTRIMKGVFEIKAKGMKEGPKTCVLRFLLKFVEDDANF 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0091 1206 Pfam ATPase family associated with various cellular activities (AAA) 423 558 IPR003959 GO:0005524|GO:0016887
Glsi04g0091 1206 PRINTS Bromodomain signature 951 969 IPR001487 GO:0005515
Glsi04g0091 1206 PRINTS Bromodomain signature 935 951 IPR001487 GO:0005515
Glsi04g0091 1206 PRINTS Bromodomain signature 969 988 IPR001487 GO:0005515
Glsi04g0091 1206 Gene3D - 691 855 IPR027417 -
Glsi04g0091 1206 MobiDBLite consensus disorder prediction 1110 1130 - -
Glsi04g0091 1206 SUPERFAMILY Bromodomain 901 1015 IPR036427 GO:0005515
Glsi04g0091 1206 CDD Bromo_AAA 903 1013 - -
Glsi04g0091 1206 Pfam Bromodomain 916 984 IPR001487 GO:0005515
Glsi04g0091 1206 SMART bromo_6 903 1010 IPR001487 GO:0005515
Glsi04g0091 1206 PANTHER AAA DOMAIN-CONTAINING 45 1020 IPR045199 -
Glsi04g0091 1206 MobiDBLite consensus disorder prediction 140 166 - -
Glsi04g0091 1206 Gene3D - 895 1023 IPR036427 GO:0005515
Glsi04g0091 1206 FunFam ATPase family, AAA domain-containing 2 381 564 - -
Glsi04g0091 1206 FunFam ATPase family AAA domain-containing protein 895 1023 - -
Glsi04g0091 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 629 IPR027417 -
Glsi04g0091 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 707 921 IPR027417 -
Glsi04g0091 1206 Gene3D - 559 644 - -
Glsi04g0091 1206 Pfam AAA+ lid domain 585 622 IPR041569 -
Glsi04g0091 1206 MobiDBLite consensus disorder prediction 231 260 - -
Glsi04g0091 1206 ProSiteProfiles Bromodomain profile. 926 988 IPR001487 GO:0005515
Glsi04g0091 1206 MobiDBLite consensus disorder prediction 62 88 - -
Glsi04g0091 1206 ProSitePatterns AAA-protein family signature. 528 546 IPR003960 GO:0005524|GO:0016887
Glsi04g0091 1206 MobiDBLite consensus disorder prediction 135 301 - -
Glsi04g0091 1206 MobiDBLite consensus disorder prediction 1 26 - -
Glsi04g0091 1206 CDD RecA-like_Yta7-like 387 556 - -
Glsi04g0091 1206 MobiDBLite consensus disorder prediction 184 230 - -
Glsi04g0091 1206 FunFam ATPase family AAA domain-containing protein 2B 559 644 - -
Glsi04g0091 1206 Gene3D - 381 651 IPR027417 -
Glsi04g0091 1206 SMART AAA_5 419 560 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0091 Glsi-ChrGlsi04 727274 734454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0091 417 623 Calmodulin-binding Proteins AT3G56690 40.580 4.16e-41 162