Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0083 ATGAGATTCTCAGTAAGACATTTCTTAGTGTCCGCTTTGAATGTGAACCCATGGGCAGCTCCGTTTCTATTTGAACTATCGGTTTTATCATATTTGTGGTCGCCGGTTTCAGGTCTTGGTTCCATGTCTTCCATTGCCATCTCTTATGGAGAAAAAGGTTCTGTTTTTTGTGGTTTGAAATCAGATGGGTCACATACTGTGACCTGTTACGGATCAAACTCGGCCGTAGTCTATGGAATACCAACCCATTTTCCACTTCTCGGTCTAACCGCTGGTGACGGCTTTGTCTGTGGGCTTCTAATGGATTCTAGGCAACCTTATTGTTGGGGTAGCAGTGGTTATATTGAAATGGGTGTTCCACAACCTATGACTAAAGGAGCTGAGTACCTAGAAATCAGTGCCGGGGATTACCATGTTTGTGGATTGAGGAAACCCTTGACAGGAAGGCATAGAAACACTTCTTTTGTCGATTGCTGGGGTTACAACATGACCAAGAATTATGTGTTTGATGGGCGGATTCACTCAATCTCAGCCGGTTCTGAATTCAACTGTGGGTTATTTTCCCAGAATAGGACTGTCTTCTGCTGGGGTGATGAGACTAGTAGCCGCGTAATTAGTTTAATTCCTAAAAACAGGAGATTCCAGATGATTTCTTCAGGTGGGTATCATGTCTGTGGAATTTTAGAGGGGGTGAATTCTAAAACTGTTTGCTGGGGAAGGAGCTTGGATATTGAGGAAGAAATTTCGGTTAAACATTCAGGTCAAGGCAACGTTGATTTGGCTCCATATGAACCGATGCTCTCTGTAGTGGGAGGAAAATTTCATGCTTGTGGCATTAGGAGTTATGATCGTGGGGTGATTTGTTGGGGTTTTATTATCAAAGGAAGCACCCCAGCTCCTAGTGGGACTAAGCTCTTTGAAATTGCTGCTGGAAATTATTTTACTTGTGGAGTACTTGCTGATAAATCTCTTCTGCCTGTTTGTTGGGGTATTGGCTTCCCTACCTCTCTCCCATTAGCTGTCTCGCCCGGACTCTGCCAGCCTCATCCATGCCCTCCTGGTTTCTATGAAATTGAACAGCAGAAGGGTCTCTGCAAGTCCCCAGATTCTCGGGTTTGCATGCCCTGCAGTGGGGCTTGTCCTGATGAAATGTATCAAAAAAGTGTGTGCAATTATACAGCTGACAGACTATGTGAATATAACTGTTCTTCTTGTTCCTCACCTGAATGCTTCGCAAATTGTTCTTCATATTCCAATGCAACCATGGGGAAGAAAAATGACAAGTTTTGGTCTCTGCAGTTGCCAGTCGTTGTTGCAGAGATCGCTTTTGCAGTTTTCTTCGTTAGTATCGTATCCTTAACTGCTATTTTATATGTTCGCTACAAGCTACGTGATTGTCAGTGTTCCATACAAGGGTCAAACGTGAAGAAACTTCAAGGGAGCAGCTCTTCCCTCCAAAAGGAGAACAGCAAAATCAGTCCAGACCTGGAGGAGCTCAAGATTAGGAGGGCTCAAATGTTCACCTATGAGGAACTTGAGAGGGCAACGGGTGGGTTCAAAGAAGAATCCATAGTTGGTAAGGGAAGTTTTTCGTGTGTATTCAAGGGGATCTTGAAAGATGGGACCGTTGTCGCCGTCAAAAGGGCCATAATGTCCCCCAACATGCAGAAGAATTCCAAAGAGTTTCACACAGAGCTCGACTTACTCTCCAGATTGAACCATGCCCATTTGCTCAACCTACTAGGCTATTGTGAAGAAGGTGGAGAAAGGCTTCTTGTTTATGAGTTCATGGCTCATGGCTCCTTGCATCAACACCTTCATGGGAAAAACAAGGCTTTGAAAGAGCAATTGGATTGGGTTAGAAGGGTAACAATTACAGTTCAAGCAGCTAGAGGAATTGAATATTTGCATGGCTATGCTTGCCCACCTGTGATTCACCGAGACATTAAGTCTTCAAACATCCTCATTGATGAAGAACACAATGCCCGAGTTTCTGATTTTGGTTTGTCGTTATTGGGGCCGGCAGATAGTAGCTCCCCGTTGGCTGAGCTACCCGCTGGGACTCTTGGGTATCTGGATCCTGAATATTATAGGCTCCATTACCTTACCACCAAATCTGATGTCTACAGCTTTGGTGTTCTGCTCTTGGAAATTCTAAGTGGCAGAAAAGCCATTGACATGCAATATGAAGAAGGGAATATCGTTGAATGGGCAGTGCCTCTGATCAAGTCAGGAGATGTAACTGCTATTTTGGACCCAGTTCTGAAACCTCCTTCTGATCTTGAATCCTTGAAAAGGATTGCAAATGTAGCTTGTAAATGCGTGAGGATGAGAGGGAAGGAGAGGCCCTCCATGGACAAAGTTACAACGGCTTTGGAGCGAGCTCTTGCACAGTTAATGGGTAGCCCATGCAACGAGCAGCCAATTTTGCCCACTGAGGTGGTGTTGGGAAGTAACAGACTACACAAGAAATCGTCCCAAAGATCTTCGAACAAGTCGGTTTCAGAAACTGATGTGGCGGAAACTGAGGATCACGGGTTTGAGTTCAGAGCACCTTCATGGATAACTTTCCCCAGCGTTGCTTCTTCTCAAAGAAGAAAGTCGTCAGTGTCAGAGGCTGATGTTGATGGGAAAAATTCAGAAGTGAAGAACTTGGGCCATGGAGGAGGAGGTGGTGACGTTTTAAGGAGTCTGGAGGAAGAGATTGGACCCGCTTCTCCTCAAGAGAGGCTGTTCTTGCAGCACAATTTCTAA 2754 0.4492 MRFSVRHFLVSALNVNPWAAPFLFELSVLSYLWSPVSGLGSMSSIAISYGEKGSVFCGLKSDGSHTVTCYGSNSAVVYGIPTHFPLLGLTAGDGFVCGLLMDSRQPYCWGSSGYIEMGVPQPMTKGAEYLEISAGDYHVCGLRKPLTGRHRNTSFVDCWGYNMTKNYVFDGRIHSISAGSEFNCGLFSQNRTVFCWGDETSSRVISLIPKNRRFQMISSGGYHVCGILEGVNSKTVCWGRSLDIEEEISVKHSGQGNVDLAPYEPMLSVVGGKFHACGIRSYDRGVICWGFIIKGSTPAPSGTKLFEIAAGNYFTCGVLADKSLLPVCWGIGFPTSLPLAVSPGLCQPHPCPPGFYEIEQQKGLCKSPDSRVCMPCSGACPDEMYQKSVCNYTADRLCEYNCSSCSSPECFANCSSYSNATMGKKNDKFWSLQLPVVVAEIAFAVFFVSIVSLTAILYVRYKLRDCQCSIQGSNVKKLQGSSSSLQKENSKISPDLEELKIRRAQMFTYEELERATGGFKEESIVGKGSFSCVFKGILKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNKALKEQLDWVRRVTITVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKSGDVTAILDPVLKPPSDLESLKRIANVACKCVRMRGKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSNRLHKKSSQRSSNKSVSETDVAETEDHGFEFRAPSWITFPSVASSQRRKSSVSEADVDGKNSEVKNLGHGGGGGDVLRSLEEEIGPASPQERLFLQHNF 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0083 917 FunFam serine/threonine-protein kinase-like protein CCR1 489 596 - -
Glsi04g0083 917 ProSiteProfiles Protein kinase domain profile. 519 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0083 917 MobiDBLite consensus disorder prediction 861 909 - -
Glsi04g0083 917 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 350 398 IPR001368 GO:0005515
Glsi04g0083 917 Gene3D - 88 336 IPR009091 -
Glsi04g0083 917 Pfam Protein tyrosine and serine/threonine kinase 522 791 IPR001245 GO:0004672|GO:0006468
Glsi04g0083 917 SUPERFAMILY Protein kinase-like (PK-like) 498 792 IPR011009 -
Glsi04g0083 917 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 28 917 - -
Glsi04g0083 917 FunFam Serine/threonine-protein kinase-like protein CR4 38 205 - -
Glsi04g0083 917 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Glsi04g0083 917 Gene3D Transferase(Phosphotransferase) domain 1 597 804 - -
Glsi04g0083 917 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Glsi04g0083 917 SUPERFAMILY RCC1/BLIP-II 40 291 IPR009091 -
Glsi04g0083 917 MobiDBLite consensus disorder prediction 820 843 - -
Glsi04g0083 917 FunFam Receptor protein kinase CRINKLY4 597 799 - -
Glsi04g0083 917 SMART serkin_6 519 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0083 917 Gene3D Phosphorylase Kinase; domain 1 489 596 - -
Glsi04g0083 917 MobiDBLite consensus disorder prediction 820 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0083 Glsi-ChrGlsi04 651477 654230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0083 22 917 Receptor kinase-like Gene Family AT3G59420 69.435 0.0 1275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Glsi04g0083 PK_Tyr_Ser-Thr 7.3e-44 CL0016