Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0081 ATGAAGGAAAAACAGAAGCTTCACCACCAAATACGCGAACAGGCGTTGAGGAAATCTAAGGGCGTGCCGTGCCGGCCTCATAATTTGGCGGGGTCCATTCTCCAACGTCTCGCTCCCTCAACATTTAGATCCGTCATCAACGGTCACACACAGAGATACCTCGGAGCCTTCCTTCCCCACTCTTGGTTTCCCTACCACAACGTTGTTGTTGAAATCACAACACTTTCCTCTTCGTCTTCTTCCTCACGGGCCCTTAACAGAATGGACCCCATTGAGCTCAAGCGCGTTTTCCAAATGTTTGACCGCAATGGGGACGGTCGGATCACAAAGAAGGAGCTAAATGATTCGCTGGAAAACTTGGGCATTTTCATTCCGGATAAGGACTTGAGGCAAATGATCGATAAGATCGACCGTAACGGGGATGGATTTGTGGACGTGGATGAATTTGGTGAGTTATACCAATCCCTAATGGATGAACGTGATGAAGAGGAGGACATGAGAGAGGCATTCAACGTGTTTGATCAAAACGGTGATGGGTTTATCACCGTGGAAGAATTGAGATCGGTTTTGGCTTCTCTTGGGCTAAAACAGGGAAGAACTGTGGAAGATTGCAAGAAGATGATAATGAAGGTGGATGTCGATGGAGATGGGAAGGTGAACTACAAGGAGTTTAAGCAAATGATGAAGGGAGGTGGCTTCGGTTCTCTCAGTTAA 714 0.472 MKEKQKLHHQIREQALRKSKGVPCRPHNLAGSILQRLAPSTFRSVINGHTQRYLGAFLPHSWFPYHNVVVEITTLSSSSSSSRALNRMDPIELKRVFQMFDRNGDGRITKKELNDSLENLGIFIPDKDLRQMIDKIDRNGDGFVDVDEFGELYQSLMDERDEEEDMREAFNVFDQNGDGFITVEELRSVLASLGLKQGRTVEDCKKMIMKVDVDGDGKVNYKEFKQMMKGGGFGSLS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0081 237 CDD EFh 92 149 IPR002048 GO:0005509
Glsi04g0081 237 Pfam EF-hand domain pair 163 229 IPR002048 GO:0005509
Glsi04g0081 237 Pfam EF-hand domain pair 92 154 IPR002048 GO:0005509
Glsi04g0081 237 MobiDBLite consensus disorder prediction 1 20 - -
Glsi04g0081 237 Gene3D - 70 155 - -
Glsi04g0081 237 MobiDBLite consensus disorder prediction 1 22 - -
Glsi04g0081 237 SUPERFAMILY EF-hand 92 230 IPR011992 -
Glsi04g0081 237 ProSiteProfiles EF-hand calcium-binding domain profile. 161 196 IPR002048 GO:0005509
Glsi04g0081 237 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Glsi04g0081 237 Gene3D - 156 231 - -
Glsi04g0081 237 ProSiteProfiles EF-hand calcium-binding domain profile. 199 234 IPR002048 GO:0005509
Glsi04g0081 237 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Glsi04g0081 237 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 163 229 - -
Glsi04g0081 237 ProSitePatterns EF-hand calcium-binding domain. 212 224 IPR018247 -
Glsi04g0081 237 SMART efh_1 128 156 IPR002048 GO:0005509
Glsi04g0081 237 SMART efh_1 92 120 IPR002048 GO:0005509
Glsi04g0081 237 SMART efh_1 203 231 IPR002048 GO:0005509
Glsi04g0081 237 SMART efh_1 165 193 IPR002048 GO:0005509
Glsi04g0081 237 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
Glsi04g0081 237 CDD EFh 169 229 IPR002048 GO:0005509
Glsi04g0081 237 FunFam calmodulin-like protein 3 162 232 - -
Glsi04g0081 237 FunFam Calmodulin-like protein 5 76 161 - -
Glsi04g0081 237 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Glsi04g0081 237 ProSitePatterns EF-hand calcium-binding domain. 174 186 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0081 Glsi-ChrGlsi04 639506 640612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0081 27 235 EF-hand Containing Proteins AT2G43290 61.927 1.28e-82 244