Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0074 ATGAGAATTCAATGCGATGTGTGTGAGAAAGCTCCGGCGACGGTGATTTGTTGCGCGGACGAGGCGGCTTTATGCGCCAAATGTGACATTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTCCTTCAGTGCCTCTCTAACAAGCTTCCCAGATGTGACATTTGCCAAGACAGGGCAGCTTTCATATTTTGTGTGGAAGACAGGGCACTGTTGTGTCAAGATTGTGATGAACCGATCCATTCAGCGGGCAGCCTTTCTGCAAATCATCAGCGCTTCCTTGCTACTGGTATCAAGGTGGCCTTGAGTTCTTCTAATTGCACCAAAGACAAGCAAGAAAGTCGCTTAGAGCCTCAGCCACCCAATCAAGTTTCTATGAAAATTCCTTCTCACTCTCAGCCCCAGCAAGTAGTGCCTACCTTCACATCCTCTTGGGCTGTAGATGACTTGTTGGAATTAACTGACTTCGAATCATCTGACAAGAAGGAATCCCTTGAGTTTGGAGAACTGGAATGGTTATCAGACGTATGTCTATTTGGCGAACAATTTCCCCAGGAAGCCTTAGCTGCAGCTGAAGTCCCACAGCTACCACTTCCACAAACCAGTAATGTCGTCTCATACAAAGCCTCCAAGTCCTTTATGTCTCAAAAAAAGCCTAGGATTGAAGACGATGATGAGCACTTCACTGTGCCTGATCTTGGCTGA 717 0.47 MRIQCDVCEKAPATVICCADEAALCAKCDIEVHAANKLASKHQRLLLQCLSNKLPRCDICQDRAAFIFCVEDRALLCQDCDEPIHSAGSLSANHQRFLATGIKVALSSSNCTKDKQESRLEPQPPNQVSMKIPSHSQPQQVVPTFTSSWAVDDLLELTDFESSDKKESLEFGELEWLSDVCLFGEQFPQEALAAAEVPQLPLPQTSNVVSYKASKSFMSQKKPRIEDDDEHFTVPDLG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0074 238 CDD Bbox1_BBX-like 5 47 - -
Glsi04g0074 238 Gene3D Classic Zinc Finger 1 95 - -
Glsi04g0074 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Glsi04g0074 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Glsi04g0074 238 CDD Bbox1_BBX-like 57 98 - -
Glsi04g0074 238 SMART bboxneu5 52 99 IPR000315 GO:0008270
Glsi04g0074 238 SMART bboxneu5 4 47 IPR000315 GO:0008270
Glsi04g0074 238 MobiDBLite consensus disorder prediction 219 238 - -
Glsi04g0074 238 MobiDBLite consensus disorder prediction 114 137 - -
Glsi04g0074 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Glsi04g0074 238 MobiDBLite consensus disorder prediction 121 137 - -
Glsi04g0074 238 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0074 Glsi-ChrGlsi04 609491 610908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0074 1 165 Orphan Transcription Factor Family AT1G06040 66.071 2.90e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi04g0074 zf-B_box 4.3e-08 No_clan