LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g0062	ATGGACTTAACCCATTACACTTCAAACAAACCACACTTCAATTTTAATGGTAATCTATATCAGGCATCCATAGACATGCACGGCGGCAACCATCCCCAGAACAGCCACACTTCTACAAGTCGCTCATCCGACTCCGGCGAGCCTTCCCACAACGGGAAATGGGCCTCTAAGCTTCTTAGGGAGTGTGCTAGAGCCATCTCCGACGGCGACTCCTCCAAAATCCACCATCTTCTATGGATGTTGAACGAGCTGGCTTCCCCTTATGGTGACTGCGATCAGAAATTAGCTTCTTACTTCTTGCAAGCTCTTTTCTCTAAGGCTACGGAGTCCGGGCAAAGGTGCTATAAGACTCTCTCATCCGTGGCTGAAAAAACCCACTCCTTCGATTCTGCCCGAAAGCTCATACTCAAGTTTCAAGAGGTAAGCCCTTGGACCACCTTTGGACATGTTGCTTCAAACGGTGCTATTCTAGAAGCCTTAGAGGGTGAGACCAAGCTTCACATAATTGATATAAGCAATACTCTTTGCACTCAATGGCCTACTCTGTTGGAAGCCTTGGCCACGAGAAGCGATGAAACTCCTCGCCTCAAGCTCACAGTAGTAGGATCTGTGATGAAGGAAGTAAGGCAAAGGATGGAAAAGTTTGCTAGACTTATGGGAGTACCCTTTGAGTTTAATGTGATTACTGGGTTAAATCATTTGGGAGAGCTCACAAAAGAGGGGCTGGGAGTGCAAGAGGACGAGGCAATTGCAGTGAATTGTATTGGGGCATTGAGAAGAGTTGAAGTGGAGGACAGGGGAGCCGTGATTCGCCTCTTCAAATCACTCAGTCCTCGAGTGGTGACCATTGTTGAGGAAGAAGCAGACTTGTGCAGCTCAAGAAACGACTTCGTGAAGGGGTTTGAAGAGTGCCTCAGGTTTTTCACCCTTTACTTTGAGATGCTGGAGGAGAGCTTTCCCACTACGAGTAACGAGCGATTGATGCTAGAGAGGGAGTGCTCGAGAAGCATAGTTAGGGTTTTGGCTTGCAGCAATGAAGAAGGTGGATTGGGAGAGTGCGAGAGAAGGGAGAGAGGGAGGCAGTGGGGTGAGAGGCTGAAGGAGGCGTTTTGCCCAGTTGGGTTCAGCGATGATGTAGTGGATGATGTGAAGGCATTGCTGAAGAGGTACCGGGCAGGATGGTCGCTGGCGGTGCCACAAGCAGATGATGAAGAACTTTCAGGAATTTACTTGACCTGGAAGGAGGAACCAGTAGTTTGGGCTTCAGCCTGGAAACCCTAG	1281	0.4902	MDLTHYTSNKPHFNFNGNLYQASIDMHGGNHPQNSHTSTSRSSDSGEPSHNGKWASKLLRECARAISDGDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFSKATESGQRCYKTLSSVAEKTHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLEALATRSDETPRLKLTVVGSVMKEVRQRMEKFARLMGVPFEFNVITGLNHLGELTKEGLGVQEDEAIAVNCIGALRRVEVEDRGAVIRLFKSLSPRVVTIVEEEADLCSSRNDFVKGFEECLRFFTLYFEMLEESFPTTSNERLMLERECSRSIVRVLACSNEEGGLGECERRERGRQWGERLKEAFCPVGFSDDVVDDVKALLKRYRAGWSLAVPQADDEELSGIYLTWKEEPVVWASAWKP	426

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g0062	426	MobiDBLite	consensus disorder prediction	24	50	-	-
	Glsi04g0062	426	Pfam	GRAS domain family	57	425	IPR005202	-
	Glsi04g0062	426	ProSiteProfiles	GRAS family profile.	46	425	IPR005202	-
	Glsi04g0062	426	PANTHER	OSJNBA0084A10.13 PROTEIN-RELATED	55	415	IPR005202	-
	Glsi04g0062	426	MobiDBLite	consensus disorder prediction	24	52	-	-

Showing 1 to 5 of 5 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g0062	Glsi-ChrGlsi04	544551	545831	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g0062	29	426	GRAS Transcription Factor Family	AT4G37650	53.428	1.61e-150	436

Showing 1 to 1 of 1 entries

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Glsi04g0062		GRAS	4.1e-95	CL0063

Showing 1 to 1 of 1 entries