LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g0062	ATGGACTTAACCCATTACACTTCAAACAAACCACACTTCAATTTTAATGGTAATCTATATCAGGCATCCATAGACATGCACGGCGGCAACCATCCCCAGAACAGCCACACTTCTACAAGTCGCTCATCCGACTCCGGCGAGCCTTCCCACAACGGGAAATGGGCCTCTAAGCTTCTTAGGGAGTGTGCTAGAGCCATCTCCGACGGCGACTCCTCCAAAATCCACCATCTTCTATGGATGTTGAACGAGCTGGCTTCCCCTTATGGTGACTGCGATCAGAAATTAGCTTCTTACTTCTTGCAAGCTCTTTTCTCTAAGGCTACGGAGTCCGGGCAAAGGTGCTATAAGACTCTCTCATCCGTGGCTGAAAAAACCCACTCCTTCGATTCTGCCCGAAAGCTCATACTCAAGTTTCAAGAGGTAAGCCCTTGGACCACCTTTGGACATGTTGCTTCAAACGGTGCTATTCTAGAAGCCTTAGAGGGTGAGACCAAGCTTCACATAATTGATATAAGCAATACTCTTTGCACTCAATGGCCTACTCTGTTGGAAGCCTTGGCCACGAGAAGCGATGAAACTCCTCGCCTCAAGCTCACAGTAGTAGGATCTGTGATGAAGGAAGTAAGGCAAAGGATGGAAAAGTTTGCTAGACTTATGGGAGTACCCTTTGAGTTTAATGTGATTACTGGGTTAAATCATTTGGGAGAGCTCACAAAAGAGGGGCTGGGAGTGCAAGAGGACGAGGCAATTGCAGTGAATTGTATTGGGGCATTGAGAAGAGTTGAAGTGGAGGACAGGGGAGCCGTGATTCGCCTCTTCAAATCACTCAGTCCTCGAGTGGTGACCATTGTTGAGGAAGAAGCAGACTTGTGCAGCTCAAGAAACGACTTCGTGAAGGGGTTTGAAGAGTGCCTCAGGTTTTTCACCCTTTACTTTGAGATGCTGGAGGAGAGCTTTCCCACTACGAGTAACGAGCGATTGATGCTAGAGAGGGAGTGCTCGAGAAGCATAGTTAGGGTTTTGGCTTGCAGCAATGAAGAAGGTGGATTGGGAGAGTGCGAGAGAAGGGAGAGAGGGAGGCAGTGGGGTGAGAGGCTGAAGGAGGCGTTTTGCCCAGTTGGGTTCAGCGATGATGTAGTGGATGATGTGAAGGCATTGCTGAAGAGGTACCGGGCAGGATGGTCGCTGGCGGTGCCACAAGCAGATGATGAAGAACTTTCAGGAATTTACTTGACCTGGAAGGAGGAACCAGTAGTTTGGGCTTCAGCCTGGAAACCCTAG	1281	0.4902	MDLTHYTSNKPHFNFNGNLYQASIDMHGGNHPQNSHTSTSRSSDSGEPSHNGKWASKLLRECARAISDGDSSKIHHLLWMLNELASPYGDCDQKLASYFLQALFSKATESGQRCYKTLSSVAEKTHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLEALATRSDETPRLKLTVVGSVMKEVRQRMEKFARLMGVPFEFNVITGLNHLGELTKEGLGVQEDEAIAVNCIGALRRVEVEDRGAVIRLFKSLSPRVVTIVEEEADLCSSRNDFVKGFEECLRFFTLYFEMLEESFPTTSNERLMLERECSRSIVRVLACSNEEGGLGECERRERGRQWGERLKEAFCPVGFSDDVVDDVKALLKRYRAGWSLAVPQADDEELSGIYLTWKEEPVVWASAWKP	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g0062	426	MobiDBLite	consensus disorder prediction	24	50	-	-
	Glsi04g0062	426	Pfam	GRAS domain family	57	425	IPR005202	-
	Glsi04g0062	426	ProSiteProfiles	GRAS family profile.	46	425	IPR005202	-
	Glsi04g0062	426	PANTHER	OSJNBA0084A10.13 PROTEIN-RELATED	55	415	IPR005202	-
	Glsi04g0062	426	MobiDBLite	consensus disorder prediction	24	52	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g0062	Glsi-ChrGlsi04	544551	545831	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g0062	29	426	GRAS Transcription Factor Family	AT4G37650	53.428	1.61e-150	436

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Glsi04g0062		GRAS	4.1e-95	CL0063