Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0055 ATGGAATACCCTATTTCTCCTACGGGAAGAGATAGTGGGTATTGGACATCTCCTCCAGCCCAGTTAGAGGGATCAACATTAGATGATGGCACAAGAAATTCAATTTCAGAGGAGATGCTTAGCACCCTATCCGAGCTCATGAACTTTGATACTTATGCTGGTTGGTGCAATAGCTCATCAATGGCAGATCAGGTTTTGGCAAATAGGCTTTCACCATTTACCTCAGTACCTTATGCATCGCCTGATAGATTCAATTTAATGGAGCAGAGCAGTGGGTTATTCTTTATGGGTGACGTTAATAGAAATTACAACACTATGAGAAGTTCCCCCAGTTCTGGGGAAAAAGTTGCATTTCAACAAATGGACACCCAACTTGGGTTCCCTGATGATGCAAATGATGCAAATAACCTAAATTTTAAACAAGATATTCATGGCTCTTTTCAACAACTTGATACCTTAGACATGGGCAGTTGTATAATTTCTAGGCCACCTGGCTGGTCACTAGAGGATAGAATGCTGAGGGCTTTGTCCCTTTTCAAGGAATCAGCTGGTGGGGGAATCTTGGCACAAGTTTGGGTACCCATTAAGCATGGCGATTCATTCATTTTGACCACAAGTGAGCAACCATATTTGCTAGACCAAATGCTTGCAGGATATCGTGAAGTGTCAAGAGAATTTACGTTTTCACCAGAAGGAAGACAGGGTTCTTTCCCAGGACTTCCTGGTCGTGTCTTTATCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTACTACAATAAGAGTGAGTATCTGAGGGTTGAGCATGCGATTAATCATGAGGTTCGAGGATCAATTGCTGTTCCATTGTTTGATCTCAACTCTGAAATGCCATGTTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGTCTGATTTTGATAAAGAACTGGATATAGTTTGTCGTGCACTCCAGGTTGTAAATTTAAGGACTACTATGCCTCTACGAATTCTTCCTCAGTGTCTCTCAAATAACAAAAGAGCTGCTTTAATTGAGATAATTGATGTGTTACGAGCTGTGTGTCATGCACATAGATTGCCCCTGGCATTGACGTGGATTCCCTGTTGTTATACCAAGGGAATTGGCGATGAAACTAAAAGAATACGAATTAAAGAGGGTCATTCAAGTTCGAGTGAGAAATGCGTGCTATGCATCGAAGAATCAGCTTGCTACGTAAATGATAGAGTGATGGAAGGATTTGTTCATGCATGTGTTGAACATCATCTTGAGGAAGGTCAAGGTATAGCTGGGAAAGCTATTCAGTCAAGTCATCCATTCTTCTATCCTGATGTGAAGGCATATGATATTAGTGAATATCCACTTGTTCATCATGCACGCAAGTATAACTTGAATGCTGCGGTTGCAACCAGGTTAAGGAGTACCTACACTAATGATGATGATTACATATTAGAATTCTTTCTACCTGTCAATATGAGAGGGAGTTCAGAGCAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTACAGATGCTGAATTATCAGGAATACAGGGTTCACAGGTCGAATTTCAAAATGAAGGGGTATGTGGTATTTTGCCTATTTCTAGGACAAACTCTCAAATAGAATTAACAGATGATGAGCACGATTCAGTGAGGAAGTTTCCCTTGAAGGCATCCAACCTGAGGAACAATGGAATTGAAGCTGTTCATAACCAGGCAATGATTGGATCAAGAAGGCAGGTTGAGAAAAAGAAAAGTACAGCTGAGAAGAATGTCAGCTTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTCTAAAGGATGCTGCAAAGAGCATTGGTGTTTGTCCTACAACACTAAAAAGGATATGCAGGCAGCATGGCATTTTAAGATGGCCATCCCGTAAAATTAATAAAGTGAATCGTTCACTAAAGAAAATTCAGACTGTGCTCGACTCTGTTCAGGGAGTGGAAGGAGGGCTGAAGTTTGATCCATCTACAGGTGGGTTTGTGGCAGGAGGTTCAGTCATTCAAGACTTTGATGCACATAGAAGTCTTTTGTCCCCTGAGAAAAGTATGCCTGTACAAGATCCTGAGTTTGCTACACAAGATGCAGTCTCAGTACATCCGGTACGATGTAGTGAAGGTGAGAGTTCAGCAATTAAGTTGGAAGACAATGATGTTTATTTGGCAGGTCACCCGCTTGTGCACTCAAGAGGTGTGCTCATCCCAAATTCTTGTGAGCCAGCATTGAAGAAAGCCAATGCTTCTGTTGATTGTAGTGAAGATTCAAGATCGATGGCCTTGGATGATGGATCATGCCAGACAGCCTTCCTCAGGACCAAAGCTCAGAATTGTCCTGAGCAAGCATGTCTAGGTTCAGTTTTTGCAAAAGGGGATAAATGGGGTCTGAACAAGGATGGTCTGGGCCTAAAAAAATCTAGCATTGATATTGTCTCTTGGAGTTCAAGCTCCCTTGTTGCTGGTGAGATGGAAAATGTTGCAGATGGGGACAATGGGGTTGTTGAACATAACCACCCGACTTCCTCAAGTATGACAGACTCATCCAGTGGCTCTGGTTCAACTATGCATGGCAGTTCGTCAGGTTCTCAGAGCTTTGAGAATCAGAAGCATTCCAAAGTTAAATCAACCTTTGTTGACAGTGGATCAAAAATTATTGTAAAAGCCACCTATAATGAAGATACCATACGTTTCAAGTTTGATCCATCTGCAGGTTGTTTCCAGCTATACGAAGAAGTCGCAACAAGATTCAAATTACAAAATGGGTCATTCCAGCTTAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGATAAATGACTCAGATTTGCAAGAGTGTGTAGAAATATTGGAGGATATTGGCACACGTAGTGTGAAGTTTCTTGTTCGCGATATGCCTTGCTTTTTAAGCAGCTCTGGTAGTAGCAGTTGCTTCTTGAGGGGATCATAG 3003 0.4169 MEYPISPTGRDSGYWTSPPAQLEGSTLDDGTRNSISEEMLSTLSELMNFDTYAGWCNSSSMADQVLANRLSPFTSVPYASPDRFNLMEQSSGLFFMGDVNRNYNTMRSSPSSGEKVAFQQMDTQLGFPDDANDANNLNFKQDIHGSFQQLDTLDMGSCIISRPPGWSLEDRMLRALSLFKESAGGGILAQVWVPIKHGDSFILTTSEQPYLLDQMLAGYREVSREFTFSPEGRQGSFPGLPGRVFISKVPEWTSNVGYYNKSEYLRVEHAINHEVRGSIAVPLFDLNSEMPCCAVLELVTTKEKSDFDKELDIVCRALQVVNLRTTMPLRILPQCLSNNKRAALIEIIDVLRAVCHAHRLPLALTWIPCCYTKGIGDETKRIRIKEGHSSSSEKCVLCIEESACYVNDRVMEGFVHACVEHHLEEGQGIAGKAIQSSHPFFYPDVKAYDISEYPLVHHARKYNLNAAVATRLRSTYTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICRSLRTVTDAELSGIQGSQVEFQNEGVCGILPISRTNSQIELTDDEHDSVRKFPLKASNLRNNGIEAVHNQAMIGSRRQVEKKKSTAEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSTGGFVAGGSVIQDFDAHRSLLSPEKSMPVQDPEFATQDAVSVHPVRCSEGESSAIKLEDNDVYLAGHPLVHSRGVLIPNSCEPALKKANASVDCSEDSRSMALDDGSCQTAFLRTKAQNCPEQACLGSVFAKGDKWGLNKDGLGLKKSSIDIVSWSSSSLVAGEMENVADGDNGVVEHNHPTSSSMTDSSSGSGSTMHGSSSGSQSFENQKHSKVKSTFVDSGSKIIVKATYNEDTIRFKFDPSAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLINDSDLQECVEILEDIGTRSVKFLVRDMPCFLSSSGSSSCFLRGS 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0055 1000 MobiDBLite consensus disorder prediction 10 32 - -
Glsi04g0055 1000 MobiDBLite consensus disorder prediction 846 885 - -
Glsi04g0055 1000 PANTHER PROTEIN NLP8 110 994 IPR045012 GO:0003700
Glsi04g0055 1000 SMART PB1_new 901 983 IPR000270 GO:0005515
Glsi04g0055 1000 Pfam RWP-RK domain 602 650 IPR003035 -
Glsi04g0055 1000 MobiDBLite consensus disorder prediction 1 32 - -
Glsi04g0055 1000 SUPERFAMILY CAD & PB1 domains 896 984 - -
Glsi04g0055 1000 ProSiteProfiles PB1 domain profile. 901 983 IPR000270 GO:0005515
Glsi04g0055 1000 CDD PB1_NLP 902 982 IPR034891 -
Glsi04g0055 1000 ProSiteProfiles RWP-RK domain profile. 582 670 IPR003035 -
Glsi04g0055 1000 Gene3D - 898 982 - -
Glsi04g0055 1000 Pfam PB1 domain 904 982 IPR000270 GO:0005515
Glsi04g0055 1000 MobiDBLite consensus disorder prediction 853 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0055 Glsi-ChrGlsi04 483095 488794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0055 1 997 NLP Transcription Factor Family AT2G43500 48.079 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Glsi04g0055 PB1 7.1e-16 CL0072