Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0042 ATGGCGGTGAACGATGCTGATCAATCACATAAGTCTCACAGGTCTCGTCAGTCTGGTGCATCTGCCAAGAAGAAGGCCAAATCGGAGAAGAACAAGAAGAAGAAGCAGGAAGTTGGCGAGGATCAGAAAAAACAAAACCCTAAGGCATTTGCTTTTGCTTCCTCTACGAAAGCCAAGAGACTACAATCCCGTACCGTCGAGAAAGAGCAGCGTCGTCTTCACGTTCCAATTATCGATCGGGCTTATGGTGAACCGGCACCTTATGTTGTTGTGGTACAGGGTCCTCCCAAGGTTGGGAAGTCACTTCTAATAAAGTCTTTGGTAAAACATTATACGAAGCATAACTTGCCTGACGTTCAAGGTCCAATTACTATTGTATCAGGAAAGCAAAGGCGACTGCAGTTTGTGGAATGCCCAAACGATATCAATGGCATGATAGATGCTGCAAAGTTTGCCGACCTAGCATTGATTCTCATAGATGGGAGTTATGGTTTTGAAATGGAAACCTTTGAATTCCTTAATATATTGCAAGTTCATGGGTTCCCAAAGGTCATGGGAGTTCTAACTCATCTTGATAAATTCAAGGATGCTAAAAAGTTGAAGAAAACAAAGCAACGCCTCAAACACCGTTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGGAAAGTATTCCAAACGTGAAGTGCACAATCTTGCTCGCTTCATCTCTGTTATGAAGTTTCATCCTCTATCTTGGCGAACTTCCCACCCTTATGTTTTGGTGGATCGTTTTGAAGATATCACTCCTCCTGAAAGAGTGCAAGAAAATCATAAATGTGACAGAAAAGTCACACTTTATGGTTATTTGAGAGGATGTAATTTGAAAAAGGGAAATAAGGTGCACATAGCTGGAATGGGTGATCATAGTTTAGCTGCTATCACTGTTTTACCTGATCCTTGCCCTCTACCATCTGCTGCAAAAAAGAAGGGACTGCGTGATAGGGAGAAGTTATTCTATGCTCCCATGTCTGGCCTAGGGGATCTTTTATATGACAAAGATGCTGTATACATAAATATTAATGACCACCTTGTCCAGTTTTCAAAAGTGGATGAGGAAAGCTCAGCCATGACATATAAAGGAAAGGACAGAGATGTGGGAGAGGTTTTGGTGAGATCACTTCAGAATACCAAGTACTCAATTAATGAAAAACTAGAGAACAGCTCTATCAATCTTTTTAGTGAGAAGCGAAATGTATCATCAGAAGCTACAAACGATGCATACGATAGAAATGTAGATGTAGAGAAGGATTGCAAAATAGAGATTTCAAATAAATATCAGCCTAGACATGTAGTTGAAGCAGGTACAGTTGATGAAGAAAATATTGACATGGATTTGGATGGTTCAGAATCATCCAATCAAGATGGAGTACTTCAACAAGATGCCATCACAGATAGTGAAGCTGGTGGTTCTGATGAAGATGGTGATGCAACAGATAGTAAAGCCGCTCCTGGAGATCACTTAAAAGAACATGTTGAGTTTCATGGTGGAAGACTAAGGAGAAGAGCAGTCTTTGGAAATGATGTCGATCAAAATGATTTGAAGGATTCAGATGAAGAGGGTGGAGCTGTCAGTGATGATGTGGCATCTTCTGATTCAGAATCTTCAGAAGAGGGGGATGATGATGATACCGATGAAGATGACATGGGAAATGTTTCAAAGTGGAAAGAGTCTTTGGCAGAAAGAACTATCTCCCGGCAAACTCCTAGCCTGATGCAACTTGTGTATGGGAAATCTACAGTTAATTCAACCAATGTAAACAAAGAGAATGATAGTAGCGAGGGTGAGGAAAGTGAAGACTTTTTTAAGCCTAAAGAAGAAGTTAAAAAGCAAAAAATGAGAGAGGGATTAGATTGTGGAATTGTCAACACTGAGGATTGTTCCAAGATTGCAAAACTTGAGGATGTAAAATGCTTGGAAGAGAAAGATTTTGAGTACATTCGTGACCGTTTTGTCACTGGTGATTGGTCAAAAGCTGCACTGAGAAACCAAGTATCTGAAGCTAATATTGAAGAGGAATATGATGCTGTCTACGGTGACTTTGAAGATTTAGAAGCAGGAGAGAACTTTGGGTTGCCAGAGGAAGAAACTAGTAATAAAAATGAGGCCAAGTTCCATCGTGGTCAAGCTAATGAAAGTAGCTATTTTGACAAGTTGAAGGAGGAAATTGAACTTCGGAAACAAATGAATATAGCTGAACTCATTGATCTTGATGAGGCTACCCGAATAGAGATAGAAGGCTTCCGAACAGGGAGTTACCTAAGATTGGAGGTTCATGATGTTCCTTGTGAGATGGTTGAATACTTTGATCCCCACCACCCTATATTGGTAGGAGGGATTGGTATTGGGGAGGAAAATGTTGGGTATATGCAGGCCAGGTTTAAGCGGCACAGATGGCACAAGAAAGTTCTGAAGACTAGAGACCCCATTATTGTTTCTGTTGGATGGAGGCGTTACCAGACAACCCCAGTTTATGCTATTGAAGATTGCAATGGGAGGAATCGAATGCTTAAATACACTCCAGAACATATGCATTGTGTAGCTATGTTTTGGGGCCCTCTTGCCCCTCCCAACACTGGGATAGTTGCTGTTCAGAATTTATCAAACAATCAGGCAGCATTTAGGATTACTGCAACTGCTGTTGTACTTGAGTTTAATCATGCAGCAAGGATAGTGAAGAAAATCAAGTTGGTTGGTTACCCATGCAAAATATTCAAGAAGACAGCTCTTATCAAGGACATGTTCACTTCAGATCTTGAAGTAGCTCGGTTCGAAGGTGCAGCTATCCGAACAGTCAGTGGGATCAGAGGGCAGGTCAAGAAGGCTGCAAAAGAAGAAATAGGTAACCAGCCAAAGAGGAAGGGAGGCCAACCCAGTGAAGGAATTGCTCGGTGCACTTTTGAGGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACACAAGTTGAAGTTCCTCAGTTTTATAATCCCTTGACAACAGCATTGCAACCTCGTGAGCAGACCTGGCAAGGAATGAAAACTGTTGCAGAATTGAGAAGAGAACACAATCTTCCTATACCTGTAAACAAAGATTCACTATACAAAAAAATTGAAAGAAAGCCGAGGAAGTTCAATCCATTGGTGGTTCCTAAGTCTCTGCAGGCGTCTCTTCCATTTGCGTCAAAACCTAAAGATATACGCAGTCGAAAACGGCCATTACTTGCTGAGAGAAGGGCTGTTATACAGGATTCTCATGAGCGTAAAGTTCATGCTCTTGTTCAACATCTCCAATTAATTAGAAACGAGAAGATGAAAAAGCGAAAGCTTAAGGAAGAGAAGAGGAGAAAAGAGCTTGAAGCAGAGAAAGCGAAAGATGAACAGGTGCTGAGGAAGCGCCAAAGAGAGGAAAGACGGGAGAGATATCGAGGGCAAGAAAAACTGAAGAAAATTCGGAGGGCTGAGGTCTGA 3519 0.4132 MAVNDADQSHKSHRSRQSGASAKKKAKSEKNKKKKQEVGEDQKKQNPKAFAFASSTKAKRLQSRTVEKEQRRLHVPIIDRAYGEPAPYVVVVQGPPKVGKSLLIKSLVKHYTKHNLPDVQGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALILIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDAKKLKKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYSKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPERVQENHKCDRKVTLYGYLRGCNLKKGNKVHIAGMGDHSLAAITVLPDPCPLPSAAKKKGLRDREKLFYAPMSGLGDLLYDKDAVYININDHLVQFSKVDEESSAMTYKGKDRDVGEVLVRSLQNTKYSINEKLENSSINLFSEKRNVSSEATNDAYDRNVDVEKDCKIEISNKYQPRHVVEAGTVDEENIDMDLDGSESSNQDGVLQQDAITDSEAGGSDEDGDATDSKAAPGDHLKEHVEFHGGRLRRRAVFGNDVDQNDLKDSDEEGGAVSDDVASSDSESSEEGDDDDTDEDDMGNVSKWKESLAERTISRQTPSLMQLVYGKSTVNSTNVNKENDSSEGEESEDFFKPKEEVKKQKMREGLDCGIVNTEDCSKIAKLEDVKCLEEKDFEYIRDRFVTGDWSKAALRNQVSEANIEEEYDAVYGDFEDLEAGENFGLPEEETSNKNEAKFHRGQANESSYFDKLKEEIELRKQMNIAELIDLDEATRIEIEGFRTGSYLRLEVHDVPCEMVEYFDPHHPILVGGIGIGEENVGYMQARFKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDCNGRNRMLKYTPEHMHCVAMFWGPLAPPNTGIVAVQNLSNNQAAFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNQPKRKGGQPSEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPREQTWQGMKTVAELRREHNLPIPVNKDSLYKKIERKPRKFNPLVVPKSLQASLPFASKPKDIRSRKRPLLAERRAVIQDSHERKVHALVQHLQLIRNEKMKKRKLKEEKRRKELEAEKAKDEQVLRKRQREERRERYRGQEKLKKIRRAEV 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0042 1172 SMART DUF663_2 692 1006 IPR007034 -
Glsi04g0042 1172 Pfam AARP2CN (NUC121) domain 236 321 IPR012948 GO:0005634|GO:0042254
Glsi04g0042 1172 MobiDBLite consensus disorder prediction 603 626 - -
Glsi04g0042 1172 CDD BMS1 49 278 IPR037875 GO:0005525
Glsi04g0042 1172 SMART aarp2cn2 236 322 IPR012948 GO:0005634|GO:0042254
Glsi04g0042 1172 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1155 IPR039761 GO:0042254
Glsi04g0042 1172 MobiDBLite consensus disorder prediction 552 569 - -
Glsi04g0042 1172 Gene3D - 88 250 IPR027417 -
Glsi04g0042 1172 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 723 1007 IPR007034 -
Glsi04g0042 1172 MobiDBLite consensus disorder prediction 16 31 - -
Glsi04g0042 1172 MobiDBLite consensus disorder prediction 530 571 - -
Glsi04g0042 1172 MobiDBLite consensus disorder prediction 1121 1172 - -
Glsi04g0042 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 222 IPR027417 -
Glsi04g0042 1172 Coils Coil 1109 1152 - -
Glsi04g0042 1172 MobiDBLite consensus disorder prediction 486 508 - -
Glsi04g0042 1172 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 86 250 IPR030387 -
Glsi04g0042 1172 MobiDBLite consensus disorder prediction 1129 1172 - -
Glsi04g0042 1172 FunFam BMS1 ribosome biogenesis factor 88 250 - -
Glsi04g0042 1172 MobiDBLite consensus disorder prediction 1 67 - -