Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0041 ATGAAGAACGACGACCACAGCAGGCAGGAAGAAGATCAGCGGAACAGAGACAGTACCGTCGTAAGCCCAGACTCCAGATTCATTCATACCCTCAGGAATGTCCAAGGGTTACTAAAAGGTCGCAGCATCCCTGGTAAAATATTATTGACTCAGAGATCAGACCCGCTAGATAACTCAAACTCAAAGGAATCTTCACCAAATTACAAAAGGAGCTTCTCATACAGCAATGCTGGCCCAAGTGATCACACGGCTGAGGCAGTAGAGGAAGAAGTCCAGAGTATAAGCAAATCAATCAGTATTGCTGATGTGAATAAATTAAAAATATCAAGCTCTAACATTGAGAATCCATCTGAAGAAGTCCAGAAATCTTACATGGGTGCTAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTCCTTTCTGAGACGACAGTAATATTAGAGAAGTTGCGTGAATCAGCTTGGAGTGGGGTTCCTGATTATATGCGCCCTACAGTATGGAGGCTCCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTTTGAGAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAATATTATGATATTCCTGATACAGAACGTTCAGATGATGAGGTCAACATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTACCTGATGTTTCATTCTTCCAACAACAGCAAGTTCAGAAATCGTTGGAGCGCATCCTTTACACATGGGCTATTCGGCATCCTGCAAGTGGATACGTTCAGGGAATAAATGATCTTGTTACACCGTTTTTAGTTGTTTTCCTATCAGAGTACTTAGAAGGGGGTATAGATAATTGGTCAATGGCTGATTTATCTTCAGAAAAAATTTCTAATATTGAGGCAGACTGCTATTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGATCATTACACATTCGCTCAACCGGGAATTCAGAGGCTTGTTTTCAAGTTGAAGGAATTGGTCAGGAGGATCGATGAGCCTGTATCAAAACATGTGGAGGAACAAGGACTGGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGTGAGATACCCTTCCATCTCATCACACGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATTTGCGAGTTTTCTTCTAACGTGGTCAGATAACCTCCAGAAGCTTGATTTCCAAGAGTTGGTTATGTTCCTTCAACACCTTCCAACTCAGAACTGGACACACCAGGAGCTTGAGATGGTGCTTTCTCGTGCCTTTATGTGGCACAGCATGTTCAACAACTCTCCCAGCCATTTAGCTAGCTAA 1371 0.4289 MKNDDHSRQEEDQRNRDSTVVSPDSRFIHTLRNVQGLLKGRSIPGKILLTQRSDPLDNSNSKESSPNYKRSFSYSNAGPSDHTAEAVEEEVQSISKSISIADVNKLKISSSNIENPSEEVQKSYMGARATDSARVMKFTKVLSETTVILEKLRESAWSGVPDYMRPTVWRLLLGYAPPNSDRREGVLRRKRLEYLDCVSQYYDIPDTERSDDEVNMLRQIAVDCPRTVPDVSFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGGIDNWSMADLSSEKISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSKHVEEQGLEFLQFAFRWFNCLLIREIPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDNLQKLDFQELVMFLQHLPTQNWTHQELEMVLSRAFMWHSMFNNSPSHLAS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0041 456 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 137 346 IPR035969 -
Glsi04g0041 456 SMART tbc_4 156 412 IPR000195 -
Glsi04g0041 456 Gene3D - 321 456 - -
Glsi04g0041 456 ProSiteProfiles TBC/rab GAP domain profile. 159 386 IPR000195 -
Glsi04g0041 456 MobiDBLite consensus disorder prediction 52 80 - -
Glsi04g0041 456 Pfam Rab-GTPase-TBC domain 163 404 IPR000195 -
Glsi04g0041 456 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 196 320 - -
Glsi04g0041 456 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 112 429 - -
Glsi04g0041 456 MobiDBLite consensus disorder prediction 1 19 - -
Glsi04g0041 456 MobiDBLite consensus disorder prediction 1 24 - -
Glsi04g0041 456 FunFam TBC domain containing protein 321 456 - -
Glsi04g0041 456 FunFam TBC domain containing protein 189 320 - -
Glsi04g0041 456 MobiDBLite consensus disorder prediction 49 84 - -
Glsi04g0041 456 Gene3D - 136 187 - -
Glsi04g0041 456 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 322 444 IPR035969 -
Glsi04g0041 456 FunFam TBC1 domain family member 133 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0041 Glsi-ChrGlsi04 411774 423988 Dispersed/Wgd